View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_88 (Length: 249)
Name: NF3929_high_88
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_88 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 47202090 - 47201858
Alignment:
| Q |
1 |
cgtcaattattgtgtgttctgtgaacaaacacaccacggttttctaattgtatttgttgccttcattttcgctcatatcgctccttttatgttctgtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47202090 |
cgtcaattattgtgtgttctgtgaacaaacacaccacggttttctaattgtatttgttgccttcattttcgctcatatcgctccttttatgttctgtttt |
47201991 |
T |
|
| Q |
101 |
agtacatagtttcacttcacgctgaacgaacaccaaccacgtgattctgattctgacatttacccaagtacatgataaacaaacaagtacagtgtgtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47201990 |
agtacatagtttcacttcacgctgaacgaacaccaaccacgtgattctgattctgacatttacccaagtacatgataaacaaacaagtacagtgtgtgtg |
47201891 |
T |
|
| Q |
201 |
ttacactaaattcaacagtaccatattcttatt |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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| T |
47201890 |
ttacactaaattcaatagtaccatattcttatt |
47201858 |
T |
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