View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_high_96 (Length: 237)
Name: NF3929_high_96
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24964948 - 24965166
Alignment:
| Q |
1 |
aacaacgttcagctaaatttcttacttctaccagataaggcatatgaggttaatattacttaacaaacaaaatattattattctctccnnnnnnnncaaa |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24964948 |
aacaacgttctgctaaatttcttacttctaccagataaggcatatgaggttaatattacttaacaaacaaaatattattattctctcaaaaaaaa--aaa |
24965045 |
T |
|
| Q |
101 |
atattattatcacgactctaagtacaagatgtgacaagaggccacgaataattataatctgataaaacttatttgtcaacaatcatttaccaaatcaaaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
24965046 |
atattattatcacgactctaagtataagatgtgacaagaggccacgaataattataatctgacaaaacttatttgtcaacaatcatttatcaaatcaaaa |
24965145 |
T |
|
| Q |
201 |
cacaataaaggtgaacttact |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
24965146 |
cacaataaaggtgaacttact |
24965166 |
T |
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