View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_106 (Length: 227)
Name: NF3929_low_106
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_106 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 1454060 - 1454236
Alignment:
| Q |
51 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
150 |
Q |
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| T |
1454060 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
1454159 |
T |
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| Q |
151 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaacat |
227 |
Q |
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| T |
1454160 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaacat |
1454236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 1455583 - 1455751
Alignment:
| Q |
51 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
150 |
Q |
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| T |
1455583 |
ggatcataataacattgatgagccacaaaat---ccacacaccaaatctttattgagata--aataaaattccaaactacacataaacataataggctat |
1455677 |
T |
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| Q |
151 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaa |
224 |
Q |
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| T |
1455678 |
gcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaa |
1455751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 1567728 - 1567594
Alignment:
| Q |
88 |
cacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactatgcttttaatagtgtaaagtatggaaatgacacagata |
187 |
Q |
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| T |
1567728 |
cacaccaaatctttattgagata--aataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacagata |
1567631 |
T |
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| Q |
188 |
attgctatgaatctctgaattccttttgagaatacaa |
224 |
Q |
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| T |
1567630 |
actgatatgaatttttgtattccttttgagaatacaa |
1567594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 1556230 - 1556102
Alignment:
| Q |
94 |
aaatctttattgagatataaataaaattcgaaactacacataaatattgtagactatgcttttaatagtgtaaagtatggaaatgacacagataattgct |
193 |
Q |
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| T |
1556230 |
aaatctttattgagata--aataaaattccaaactacacataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgat |
1556133 |
T |
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| Q |
194 |
atgaatctctgaattccttttgagaatacaa |
224 |
Q |
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| T |
1556132 |
acgaatttttgtattccctttgagaatacaa |
1556102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 224
Target Start/End: Original strand, 1460692 - 1460860
Alignment:
| Q |
52 |
gatcattataacattgatgagccgcaaaataatctgcacatcaaa-tctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
150 |
Q |
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|||||| ||||||||||||||||||||||| | || | |||| |||||||||||||| |||||||||| ||||||| |||||| || ||||||||| |
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| T |
1460692 |
gatcataataacattgatgagccgcaaaat---ccacataccaaaatctttattgagata--aataaaattccaaactacccataaacatagtagactat |
1460786 |
T |
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| Q |
151 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaa |
224 |
Q |
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| T |
1460787 |
gcttttaatagtgtaaactattgataagaaacagataactgatacgaatttttgtattccctttgagaatacaa |
1460860 |
T |
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