View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_11 (Length: 656)
Name: NF3929_low_11
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 21 - 639
Target Start/End: Complemental strand, 31068543 - 31067917
Alignment:
| Q |
21 |
aactcagaaaaaagaattacaaca--------tcaccacaccatcatcaacaacaacatctaatcttatcaccaaaaatattcaaaaaccaacataccaa |
112 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068543 |
aactcagaaaaaagaattacaacagcatcccatcaccacaccatcatcaacaacaacatctaatcttatcaccaaaaatattcaaaaaccaacataccaa |
31068444 |
T |
|
| Q |
113 |
aaatccttcaagatccaacatagatatggaattcttgatcttatatgctttaatttctttaatctatttgttttcctcgtttaaattgtttatttgtcga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068443 |
aaatccttcaagatccaacatagatatggaattcttgatcttatatgctttaatttctttaatctatttgttttcctcgtttaaattgtttatttgtcga |
31068344 |
T |
|
| Q |
213 |
aagatgaagatagaatattatggttagcaaacaatgaattgcaaaagttatagccgagaatgcaaatatgaaacaaagagcaacaatccnnnnnnnggaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31068343 |
aagatgaagatagaatattatggttagcaaacaatgaattgcaaaagttatagccgagaatgcaaatatgaaacaaagagcaacaatcctttttttggaa |
31068244 |
T |
|
| Q |
313 |
ttaaaaaatattcatttgacaagagcaatggaaataaaatgaagcaacatgaagcttaaaattaaaaattcatgagaagctaaaaatgaagcaattaaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068243 |
ttaaaaaatattcatttgacaagagcaatggaaataaaatgaagcaacatgaagcttaaaattaaaaattcatgagaagctaaaaatgaagcaattaaaa |
31068144 |
T |
|
| Q |
413 |
caatattcaaagggagaggacgtttttaaataataggtttaaacacacttttgttcccctaactttccactagttgtgagttcggctcctattnnnnnnn |
512 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31068143 |
caatattcaaagggagaggacgtttttaaataataggtttaaacacacttttgttcccctaactttccactagttatgagttcggctcctattaaaaaaa |
31068044 |
T |
|
| Q |
513 |
caacattcccctaacttttttcccttttgcaacgttcaattttgagttggtcgaaacctatgtgactcctcatttaagtgaaatggacgccaagcaagtg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068043 |
caacattcccctaacttttttcccttttgcaacgttcaattttgagttggtcgaaacctatgtgactcctcatttaagtgaaatggacgccaagcaagtg |
31067944 |
T |
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| Q |
613 |
aggaacaagtttttagaggatccgtgt |
639 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
31067943 |
aggaacaagtttttagaggatccgtgt |
31067917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 41491874 - 41491762
Alignment:
| Q |
238 |
agcaaacaatgaattgcaaaagttatagccgagaatgcaaatatgaaacaaagagcaacaatccnnnnnnnggaattaaaaaatattcatttgacaagag |
337 |
Q |
| |
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|||||||||||||||||| ||||||| ||| |||||||||||| || |||||||||||||| | |||| ||||||||| |||||||||||||| |
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| T |
41491874 |
agcaaacaatgaattgcagaagttatggcccagaatgcaaatacaaaccaaagagcaacaattctttttttggaaataaaaaataatcatttgacaagag |
41491775 |
T |
|
| Q |
338 |
caatggaaataaa |
350 |
Q |
| |
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||||||||||||| |
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| T |
41491774 |
caatggaaataaa |
41491762 |
T |
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Back To:
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