View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_113 (Length: 216)
Name: NF3929_low_113
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_113 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 14293307 - 14293492
Alignment:
| Q |
18 |
gagtccacatcaatgaataaaatcat--gagtagttattttatagcagatgataatcaatttctatagattttgattgttggtggtgaattgtattatca |
115 |
Q |
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| T |
14293307 |
gagtccacatcaatgaataaaatcataggagtagttattttatagcagatgataatcaatttctatagattttgattgttggtggtgaattgtattatca |
14293406 |
T |
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| Q |
116 |
ttcgtgttataaataatgaattaatatatggtgttaaaatcatttgttcgtttgaaaatcaaatcccaaatgtatatatttctgtg |
201 |
Q |
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| T |
14293407 |
ttcgtgttataaataatgaattaatatatggtgttaaaatcatttgtttgtttgaaaatcaaatcccaaatgtatatatttctgtg |
14293492 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 5890600 - 5890493
Alignment:
| Q |
47 |
tagttattttatagcagatgataatcaatttctatagattttgattgttggtg-----gtgaattgtattatcattcgtgttataaataat-gaattaat |
140 |
Q |
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| T |
5890600 |
tagtcattttaaagcagatgataatcattttctatagattttgatttttgttgttgaattgaattgtataatcatttttgtcataaataatagaattaat |
5890501 |
T |
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| Q |
141 |
atatggtg |
148 |
Q |
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| T |
5890500 |
atatggtg |
5890493 |
T |
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