View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_116 (Length: 203)
Name: NF3929_low_116
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_116 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 47585073 - 47584871
Alignment:
| Q |
1 |
gaattaccaatattgtccaattccttgttggaggtcgcgttttcttcatttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattg |
100 |
Q |
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| T |
47585073 |
gaattaccgatattgtccaattccttgttggaggtcgcgttttcttcatttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattg |
47584974 |
T |
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| Q |
101 |
aagggctgttgaggtagaatgctattgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
200 |
Q |
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| T |
47584973 |
aagggctgttgaggtagaatgctattgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
47584874 |
T |
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| Q |
201 |
ttc |
203 |
Q |
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||| |
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| T |
47584873 |
ttc |
47584871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 47575343 - 47575183
Alignment:
| Q |
43 |
tcttcatttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattgaagggctgttgaggtagaatgctattgttgccattgtaggtc |
142 |
Q |
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| T |
47575343 |
tcttcagttccattacgcttaaaatatggtggttcaagaggggatggcaagttggttgaagaactgttgaggtagaatgcaactgttgccattgtaggcc |
47575244 |
T |
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| Q |
143 |
tgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttcttc |
203 |
Q |
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| T |
47575243 |
tgtcttctggattttcctgaacacataacaaaccaatgtggatgtagttgatgacttcttc |
47575183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 47594028 - 47593976
Alignment:
| Q |
127 |
gttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaat |
179 |
Q |
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| T |
47594028 |
gttgccattgtaggtcttacatttggattttcttgaacacataacaaaccaat |
47593976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 47619914 - 47619840
Alignment:
| Q |
126 |
tgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
200 |
Q |
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| T |
47619914 |
tgttgccattgtaggtctagcatttggattttcttggacacataataaaccaatttgaatgcattttataacttc |
47619840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 47637170 - 47637110
Alignment:
| Q |
126 |
tgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatg |
186 |
Q |
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| T |
47637170 |
tgttgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaatatggatg |
47637110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 469430 - 469479
Alignment:
| Q |
129 |
tgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaa |
178 |
Q |
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| T |
469430 |
tgccattgtaggtctatcatcaggattttcttgaacacataataaaccaa |
469479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 453488 - 453557
Alignment:
| Q |
131 |
ccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
200 |
Q |
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| T |
453488 |
ccattgttggtctatcatctggattttgttgcacacataataaaccaatttgaatgcatcttatgacttc |
453557 |
T |
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