View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_12 (Length: 568)
Name: NF3929_low_12
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_12 |
 | |
|
| [»] scaffold0037 (7 HSPs) |
| | |
|
Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 5e-42; HSPs: 7)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 363 - 474
Target Start/End: Original strand, 104676 - 104787
Alignment:
| Q |
363 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgcttt |
462 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
104676 |
aaattaggaaactggtaaatttatgtcccaacatcttgcgtgtcattgacaactgttgcatttttgcttttgttaaaacatcttgtctttgtgttgcttt |
104775 |
T |
|
| Q |
463 |
gctgcttttgta |
474 |
Q |
| |
|
|||||||||||| |
|
|
| T |
104776 |
gctgcttttgta |
104787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 104162 - 104220
Alignment:
| Q |
157 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
104162 |
aagggataatgtataaggattttagcagtaaatatgttaggattttagcagactcttga |
104220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 30323 - 30236
Alignment:
| Q |
363 |
aaattaagaaactggtaaatttatgttccaacatcttgcgtgacattgacaactgttgcattttttcttttgttaaaacatctcttct |
450 |
Q |
| |
|
||||||||||||| | |||||||||| | ||||| ||||||| |||||| || |||||||||||| |||| |||||||||||| |||| |
|
|
| T |
30323 |
aaattaagaaacttgcaaatttatgtccgaacatattgcgtgtcattgataagtgttgcatttttgctttggttaaaacatcttttct |
30236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 31007 - 30964
Alignment:
| Q |
324 |
tcacttttattacaacaatcatacaggagtatatcatagaaatt |
367 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
31007 |
tcacttttattacaagaatcatacacgagtatatcatagaaatt |
30964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 31291 - 31254
Alignment:
| Q |
183 |
agtgaatatgttaggattttagcagactcttgaattgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31291 |
agtgaatatgttaggattttagcagactcttgatttgt |
31254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 104939 - 105004
Alignment:
| Q |
498 |
aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
563 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
104939 |
aaaaggtcaagaagtttgcaacgcttttctcgtgaatacttaactgagacttggacctatgttact |
105004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 31098 - 31029
Alignment:
| Q |
226 |
taatttagaaactct----gtcaatatctaacaatattagtgtctgctgcatataatgtaatgcagacaa |
291 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| |||||||||| | ||| ||||||||| |||| |
|
|
| T |
31098 |
taatttagaaactctcggtgtcaatatctaacattattggtgtctgctgaacatagtgtaatgcaaacaa |
31029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 489 - 563
Target Start/End: Original strand, 14200380 - 14200455
Alignment:
| Q |
489 |
tcttcaagt-aaaaggtcgggaagtttgcaacacctttcttctgaatacttaacttagacttggacctatgctact |
563 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14200380 |
tcttcaagtgaaaaggtcgggaagtttgcaacacctttctcgtgaatacttaactgagacttggacctatgttact |
14200455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 14199837 - 14199895
Alignment:
| Q |
157 |
aagggataatgtatttggattttagcagtgaatatgttaggattttagcagactcttga |
215 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
14199837 |
aagggataatgtattaggattttagccgtgaatatgttagaattttagtagactcttga |
14199895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 14200172 - 14200238
Alignment:
| Q |
408 |
ttgacaactgttgcattttttcttttgttaaaacatctcttctttgtgttgctttgctgcttttgta |
474 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
14200172 |
ttgacaacggtttcatttttgcttttgttaaaacatattttctttgtgtggctttgctgcttttgta |
14200238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 14200127 - 14200170
Alignment:
| Q |
222 |
agattaatttagaaactctgtcaatatctaacaatattagtgtc |
265 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
14200127 |
agattaatttagaaactctgtaaatatctaacaatatgagtgtc |
14200170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University