View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_13 (Length: 554)
Name: NF3929_low_13
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 41140642 - 41140102
Alignment:
| Q |
18 |
tggggtaggaaaatgacacattctctcctgcaaagtagtggtctgcatgaaagatcaatgaagctacgtgtaaccacaaaagagcttctttttaaaccca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
41140642 |
tggggtaggaaaatgacacattctctcctgcaaagtagtggtctgcatgaaagatcaatgaagctacgtgtaaccacaaaagagcttcttctcaaaccca |
41140543 |
T |
|
| Q |
118 |
ccacacacacatacacagttagtaaactttcaacattttgaactggacatgaaaataaaacgacaatgacaacattccaattccaccgacggctttttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140542 |
ccacacacacatacacagttagtaaactttcaacattttgaactggacatgaaaataaaacgacaatgacaacattccaattccaccgacggctttttga |
41140443 |
T |
|
| Q |
218 |
ttagctgagtcatgctaataagcaaccaattatgtgtttatgttcctcgtcagctcccatgtcttggttcccaaatgcttgcgtggagtggggctataaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140442 |
ttagctgagtcatgctaataagcaaccaattatgtgtttatgttcctcgtcagctcccatgtcttggttcccaaatgcttgcgtggagtggggctataaa |
41140343 |
T |
|
| Q |
318 |
tccatgcccattcaactaaacccacttatttttaattttataacaatatttaccatttcttttttggatcccattaaaaccaaaataccttctggagggt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140342 |
tccatgcccattcaactaaacccacttatttttaattttataacaatatttaccatttcttttttggatcccattaaaaccaaaataccttctggagggt |
41140243 |
T |
|
| Q |
418 |
gtctcagaaagtttagtgtcagcacctttaatcattaacctaattaattaggtgaaatatagattatatatannnnnnnatataaatcgagtgt-----t |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
41140242 |
gtctcagaaagtttagtgtcagcacctttaatcattaacctaattaattaggtgaaatatagattatatata-ttttttatataaatcgagtgtttaagt |
41140144 |
T |
|
| Q |
513 |
tttatagattaattctacgagtcagagaaaattacaatcaac |
554 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140143 |
tgtatagattaattctacgagtcagagaaaattacaatcaac |
41140102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University