View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_15 (Length: 521)
Name: NF3929_low_15
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 327 - 500
Target Start/End: Complemental strand, 19883988 - 19883815
Alignment:
| Q |
327 |
gtgtattgctttatttttattcctttcttcactctcgtggttttatcgttacagctttaaactgagttaaacaacacatatatatgtgacaaaagcaaag |
426 |
Q |
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| T |
19883988 |
gtgtcttgctttatttttattcctttcttcactttcgtgtttttatcgttgcagctttaaactgagtgaaacaacacatatatacgtgacaaaagcaaag |
19883889 |
T |
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| Q |
427 |
tgcaatatgttcaatgttgagtgaaacttaagcttaagcaaaagctatattctttctcactttttgtctttagt |
500 |
Q |
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| T |
19883888 |
tgcaatatgttcagtgttgagtgaaacttaagcttaagcaaaagttacatcctttctcactttttgtctttagt |
19883815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 327 - 495
Target Start/End: Original strand, 20096722 - 20096886
Alignment:
| Q |
327 |
gtgtattgctttatttttattcctttcttcactctcgtggttttatcgttacagctttaaactgagttaaacaacacatatatatgtgacaaaagcaaag |
426 |
Q |
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| T |
20096722 |
gtgtcttgctttatttttattcctttcttcactctcgtgattttatcgttgcagctttaaactgagtgaaacaacacatatat----gacaaaagcaaag |
20096817 |
T |
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| Q |
427 |
tgcaatatgttcaatgttgagtgaaacttaagcttaagcaaaagctatattctttctcactttttgtct |
495 |
Q |
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| T |
20096818 |
tgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagctatattctttctcaccttttgtct |
20096886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 20090014 - 20090154
Alignment:
| Q |
42 |
aaaataagaagaataaggatcaatgagagatgggtagtctagtggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaat |
141 |
Q |
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| T |
20090014 |
aaaataagaagaataaggatcaatgagagatgggtagt-----ggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaat |
20090108 |
T |
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| Q |
142 |
gagaagctatgaatccgatacttcccgtaaagaaaattgataccct |
187 |
Q |
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| T |
20090109 |
gagaagctatgaatccgatacttcctgtaaagaaaatggataccct |
20090154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 20124561 - 20124654
Alignment:
| Q |
42 |
aaaataagaagaataaggatcaatgagagatgggtagtctagtggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaa |
140 |
Q |
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| T |
20124561 |
aaaataacaagaataagtatcaatgagagattgg-----tagtggtgctgtaagaaactgagcacatcaagtgcaaacctaattccgttatataaagaa |
20124654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 356
Target Start/End: Original strand, 20124891 - 20124921
Alignment:
| Q |
326 |
tgtgtattgctttatttttattcctttcttc |
356 |
Q |
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| T |
20124891 |
tgtgtattgctttatttttattcctttcttc |
20124921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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