View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_16 (Length: 500)
Name: NF3929_low_16
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 483
Target Start/End: Original strand, 46892838 - 46893307
Alignment:
| Q |
14 |
agacccttgtcacccttccggataaacaacacgagatctaatctaacataccatttcactaagacattgaataaatcatagatataacgaaaacaagatt |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46892838 |
agacccttgtcacccttccggacaaacaacacgagatctaatctaacataccatttcactaagacattgaataaatcatagatataacgaaaacaagatt |
46892937 |
T |
|
| Q |
114 |
atatataaccactctaatcaagagtttacaatagaatcacaattaactacacctaatcccaacacagaaaaaattagctactcatgctcatgacatgttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46892938 |
atatataaccactctaatcaagagtttacaatagaatcacaattaactacacctaatcccaacacagaaaaaattagctactcatgctcatgacatgttt |
46893037 |
T |
|
| Q |
214 |
acaatagagatgagaaggagatgaatttgctcccgaagttggtagatcaagccttgatgctcctccaccttgtgtgctcgttctccttggctcttcctat |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46893038 |
acaatagagatgagtaggagatgaatttgctcccgaagttggtagatcaagccttgatgctcctccaccttgtgtgctcgttctccttggctcttcctat |
46893137 |
T |
|
| Q |
314 |
gtaaatctctcttttaaattgtaaagaatgcccatttttgtgatatgaattgtcttttatagttggcaggaaagtgaagatcccctaaacaaattgaggc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46893138 |
gtaaatctctcttttaaattgtaaagaatgcccatttttgtgatatgaattgtcttttatagttggccggaaagtgaagatcccctaaacaaattgaggc |
46893237 |
T |
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| Q |
414 |
ccgcttagcgaattaatattgcttcagagtgaattaagtgtcggctcgaggtcactaaaaccaccaagat |
483 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
46893238 |
ccgcatagcgaattaatattgcttcagagtgaattaagtgtcagcacgaggtcactaaaaccaccaagat |
46893307 |
T |
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