View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_19 (Length: 495)
Name: NF3929_low_19
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 43698738 - 43698254
Alignment:
| Q |
1 |
agattgcttaaagcggtatttccattctagactgcaaatagcagtaactgaaggggtaatttatgtaattatattttaaatcatgtaggcattggttgat |
100 |
Q |
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| T |
43698738 |
agattgcttaaagcggtatttccatgctagactgcaaatagcagtaactgaaggggtaatttatgtgattatattttaaatcatgtaggcattggttgat |
43698639 |
T |
|
| Q |
101 |
aagcacttattaaatatggacttaattaagttgcttatctaaatgttttggcatgagatattgttttactgtcttaccactgaaatgcttatggttatgg |
200 |
Q |
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| T |
43698638 |
aagcacttaataaataaggacttaattaagttgcttatctaaatgttttggcatgagatattgttttactttcttaccactgaaatgcttatggttatgg |
43698539 |
T |
|
| Q |
201 |
ttatactatatagtactaatcaaataatttcttgactgggtggcaggatgaattggcatcctcagattcctcctctgttggagaaatttcatctacaact |
300 |
Q |
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| T |
43698538 |
ttatactatatagtactaatcaaataatttcttgactgggtggcaggatgaattggcatcctctgattcctcctctgttggagaaatttcatctacaact |
43698439 |
T |
|
| Q |
301 |
gtatgtgatattttaactccaggaagggcgtgggcaatttctatcacacagagaaatacagtaaacgaagagatttccagagccttcattggcagcggag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
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| T |
43698438 |
gtatgtgatattttaactccaggaagggcgtgggcaatttctatcacacagagaaatacagtaaatgaagagatttccagagccttcatcggcagtggag |
43698339 |
T |
|
| Q |
401 |
ctggattgaatgataaccttatttatcggtttgtatctctgatcctcaatcatagcttcatgctattttggtttactagtctctg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43698338 |
ctggattgaatgataaccttatttatcggtttgtatctctgatcctcaatcatagcttcatgctattttggtttactagtctctg |
43698254 |
T |
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