View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_21 (Length: 469)
Name: NF3929_low_21
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 34260738 - 34261169
Alignment:
| Q |
9 |
tatacaagtttatttgattgatatttaccacagcaattataaaccaataatttttgcttttaattcattgcattatttgaattgttgttcatgtaataat |
108 |
Q |
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| T |
34260738 |
tatacacgtttatttgattgatatttaccacaacaattataaaccaataatttttgcttt-aattcattgcattatttgaactgttgttcatgtaataat |
34260836 |
T |
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| Q |
109 |
cgtaattatatgattttgatatgtagttacatgtgtcggtatcacatgtccgcatatgatattaatatgtgttgg--actggatatttaatttgaaagtg |
206 |
Q |
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| T |
34260837 |
cataattatatgattttaatatgtaattatatgtgtcggtatcacacgtccgcatatgatattgatatttgctggacactggatatttaatttgaaaatg |
34260936 |
T |
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| Q |
207 |
tcggttttatatagattacgatagacaatcaagttcttctatgtacgatgagcgaattgggttattagagtgttacttgagtaatatcaaactattgatg |
306 |
Q |
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| T |
34260937 |
tcggttttatataggttgcgataggcaatcaagttcttctatctatgatgaacgaattgggttattagagtgtcacttgagtaatatca----------- |
34261025 |
T |
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| Q |
307 |
aactatgattggtactatatttcgatgagtaagtgatcatgattttgttgaccagctataactatgactaagaatcctaattattgaatttggcctac-- |
404 |
Q |
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| T |
34261026 |
----atgattgatattatatttcgattagtaagtgatcatgattttgttgaccagctataactatgactaagaatcctaattattgaatttggcctactt |
34261121 |
T |
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| Q |
405 |
-agaggatcctaattggcctattaaaagtgagcaaattgctttagaga |
451 |
Q |
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| T |
34261122 |
tagaggatcctaattggcctattaaaagtgagcaaattgctttagaga |
34261169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 34269084 - 34269127
Alignment:
| Q |
9 |
tatacaagtttatttgattgatatttaccacagcaattataaac |
52 |
Q |
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| T |
34269084 |
tatacaagtttatttgattggtatttaccacaacaattataaac |
34269127 |
T |
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