View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_23 (Length: 454)

Name: NF3929_low_23
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_23
NF3929_low_23
[»] chr7 (4 HSPs)
chr7 (39-444)||(31212078-31212473)
chr7 (331-444)||(9746079-9746191)
chr7 (363-426)||(13170297-13170361)
chr7 (396-444)||(46001949-46001997)
[»] chr3 (5 HSPs)
chr3 (51-247)||(18435523-18435721)
chr3 (331-444)||(29454530-29454642)
chr3 (331-444)||(11646251-11646364)
chr3 (366-436)||(19543838-19543907)
chr3 (384-444)||(17403927-17403987)
[»] chr8 (6 HSPs)
chr8 (331-444)||(42076674-42076787)
chr8 (84-247)||(6933533-6933698)
chr8 (335-444)||(24424057-24424168)
chr8 (331-444)||(21231024-21231135)
chr8 (376-426)||(9817427-9817477)
chr8 (251-279)||(28537813-28537841)
[»] chr4 (4 HSPs)
chr4 (331-444)||(10335216-10335330)
chr4 (331-444)||(41951266-41951378)
chr4 (363-444)||(18285327-18285410)
chr4 (331-444)||(41942251-41942365)
[»] chr2 (7 HSPs)
chr2 (51-247)||(30152305-30152507)
chr2 (363-444)||(22404682-22404765)
chr2 (332-426)||(16330969-16331062)
chr2 (332-426)||(16130238-16130331)
chr2 (376-444)||(29045686-29045754)
chr2 (351-444)||(27976325-27976416)
chr2 (351-444)||(28062853-28062944)
[»] scaffold0022 (1 HSPs)
scaffold0022 (331-434)||(2903-3004)
[»] chr1 (2 HSPs)
chr1 (343-432)||(13379243-13379331)
chr1 (248-306)||(13379131-13379189)
[»] scaffold0016 (1 HSPs)
scaffold0016 (376-444)||(108755-108823)
[»] scaffold0150 (1 HSPs)
scaffold0150 (331-431)||(34999-35095)
[»] scaffold0028 (1 HSPs)
scaffold0028 (331-431)||(147631-147727)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 444
Target Start/End: Complemental strand, 31212473 - 31212078
Alignment:
Q  39 atttaaaaccagttctaaaacttgatctcctattttcagcagcattaacaaggactttagagtaatcatcaacataacaggaggaacaatttgacgttca 138  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31212473 atttaaaaccagttctaaaacttgaactcctatttttagcagcattaacaaggactttagagtaatcatcaacataacagaaggaacaatttgacgttca 31212374  T
Q  139 tgttgaataaccatcgaannnnnnnnatttaagctagataaaggatcttataccagaatttatgacttaacaacactgaattttcatgaagaccatttaa 238  Q
    ||||||||||||||||          ||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |||| || | ||    
T  31212373 tgttgaataaccatcgggaaaattttattcaagctaggtaaaggatcttatagcagaatttatgatttaacaacactgaattttcatcaagatcagtcaa 31212274  T
Q  239 aaaacgaattgtaacgtcctgaattttgatccaagacattatgtataattctttcttctta-aaaaaaaggactaannnnnnnnnnnnnnnnnctagaac 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||| | |||||                  |||||||    
T  31212273 aaaacgaattgtaacgtcctgaattttgatccaagacattatgtcaaattctttctttttagaaaaatatgacta--tttaaaaaaaaaaaaactagaac 31212176  T
Q  338 ttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatc 437  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||    
T  31212175 ttaacaaaaatggttaaactaatctaattacaattcggaaaacccaaatttgtttcctcgcgt---------aggcaaaacatcaagcacacatcatatc 31212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 331 - 444
Target Start/End: Complemental strand, 9746191 - 9746079
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||| | ||||||||| |||||||    
T  9746191 ctagaacttaacaaaaatagttatactaatctaattacaattcataaa-cccaaatttgtttccccgcgtacacgcttcaagaaaaacatcatgcaaaca 9746093  T
Q  431 tcatatctcctttg 444  Q
    ||||||||||||||    
T  9746092 tcatatctcctttg 9746079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 13170361 - 13170297
Alignment:
Q  363 aattacaattcagaaaacccaaa-tttgtttcctcgcgtacacacttcaggcaaaacatcaagca 426  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||| ||||||||    
T  13170361 aattacaattcagaaaaaccaaaatttgtttccccgcgtacacatttcaagcaaaatatcaagca 13170297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 46001949 - 46001997
Alignment:
Q  396 cgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  46001949 cgcgtacacgcttcaagcaaaacatcaagcacacatcatatctcctttg 46001997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 18435523 - 18435721
Alignment:
Q  51 ttctaaaacttgatctcctattttcagcagcattaacaaggactttagagtaatcatcaac-ataacaggaggaacaatttgacgttcatgttgaataac 149  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||   |||| | |||||||||||||||||||| ||||||||    
T  18435523 ttctaaaatttgatctcctattttcagcagcattaacaaggactttagagtcatcattaactgaaacatgtggaacaatttgacgttcatgctgaataac 18435622  T
Q  150 catcgaannnnnnnnatttaagctagataaaggatcttataccagaatttatgacttaacaacactgaatt-ttcatgaagaccatttaaaaaacgaat 247  Q
    ||| ||         ||| ||||||| |||||||||| ||| |||||||| |||||||||||| ||||||| ||||| ||||||| | |||||||||||    
T  18435623 cattgagaaaattttattcaagctaggtaaaggatctaatagcagaatttgtgacttaacaacgctgaattcttcattaagaccagtcaaaaaacgaat 18435721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 331 - 444
Target Start/End: Complemental strand, 29454642 - 29454530
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||| ||||||||||| |||    
T  29454642 ctagaacttaacaaaaatagttatactaatctaattacaattcataaa-cccaaatttgtttccccgcgtacacacttcaagcacaacatcaagcacaca 29454544  T
Q  431 tcatatctcctttg 444  Q
    |||||||| |||||    
T  29454543 tcatatcttctttg 29454530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 11646251 - 11646364
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    ||||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| ||| | |||||||| |||||| |||    
T  11646251 ctagagcttaacaacaatagttaaactaatttaattacaatttagaaaacccaaatttgtttccccgcgtacacgctttaagcaaaacaccaagcacaca 11646350  T
Q  431 tcatatctcctttg 444  Q
    ||||||||||||||    
T  11646351 tcatatctcctttg 11646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 436
Target Start/End: Original strand, 19543838 - 19543907
Alignment:
Q  366 tacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatat 436  Q
    ||||||||  |||||||||||||||| || |  ||||||||||||  |||||||||||||| |||||||||    
T  19543838 tacaattcgaaaaacccaaatttgttccc-catgtacacacttcaaacaaaacatcaagcacacatcatat 19543907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 17403987 - 17403927
Alignment:
Q  384 aatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    ||||||||||| | |||| |  ||||||||||||||||||||| |||| |||||| |||||    
T  17403987 aatttgtttccccacgtataggcttcaggcaaaacatcaagcacacattatatcttctttg 17403927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 42076674 - 42076787
Alignment:
Q  331 ctagaacttaacaaaaatgg-ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaac 429  Q
    ||||||| ||||||||||   |||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||| |||||||| ||    
T  42076674 ctagaacataacaaaaattaattaaactaatttaattacaattcagaaaacccaaatttgtttccccgcggacacacttaagg-aaaatatcaagcacac 42076772  T
Q  430 atcatatctcctttg 444  Q
    |||||||||||||||    
T  42076773 atcatatctcctttg 42076787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 6933698 - 6933533
Alignment:
Q  84 taacaaggactttagagtaatcatcaacataac-aggaggaacaatttgacgttcatgttgaataaccatcgaannnnnnnnatttaagctagataaagg 182  Q
    |||||||||||||||||| || || |||  ||  |||||||||||||||||| ||||| ||||||||||| ||         ||| ||||||| ||||||    
T  6933698 taacaaggactttagagtcataattaactgaaataggaggaacaatttgacgctcatgctgaataaccattgagaaaattttattcaagctaggtaaagg 6933599  T
Q  183 atcttataccagaatttatgacttaacaacactgaatt-ttcatgaagaccatttaaaaaacgaat 247  Q
    |||| ||| |||||||| |||||||||||| ||||||| ||||| ||||||| | |||||||||||    
T  6933598 atctaatagcagaatttgtgacttaacaacgctgaattcttcattaagaccagtcaaaaaacgaat 6933533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 444
Target Start/End: Complemental strand, 24424168 - 24424057
Alignment:
Q  335 aacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgc-gtacacacttcaggcaaaa-catcaagcaaacatc 432  Q
    |||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||| |||  ||||| ||||| |||||| |||| || | | |||    
T  24424168 aacttaacaaaaatagttaaattagtctaattacaattcagaaaaaccaaatttgtttccccgcaatacacgcttcaagcaaaaccatcgagaacatatc 24424069  T
Q  433 atatctcctttg 444  Q
    ||||||||||||    
T  24424068 atatctcctttg 24424057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 21231024 - 21231135
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    ||||||| |||||||| | ||||||||||| ||||||||||||| ||| ||||||||||||| | |  || ||| | ||| ||||||||||||||| |||    
T  21231024 ctagaacctaacaaaa-tagttaaactaatttaattacaattca-aaaccccaaatttgttttcccatgtccacgcatcaagcaaaacatcaagcacaca 21231121  T
Q  431 tcatatctcctttg 444  Q
    |||| ||| |||||    
T  21231122 tcatctcttctttg 21231135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 9817427 - 9817477
Alignment:
Q  376 aaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagca 426  Q
    |||||||| |||| ||||| |||| |||||||||| |||||||||||||||    
T  9817427 aaaacccatatttatttccccgcggacacacttcaagcaaaacatcaagca 9817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 28537841 - 28537813
Alignment:
Q  251 aacgtcctgaattttgatccaagacatta 279  Q
    |||||||||||||||||||||||||||||    
T  28537841 aacgtcctgaattttgatccaagacatta 28537813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 10335216 - 10335330
Alignment:
Q  331 ctagaacttaacaaaaatgg-ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaac 429  Q
    ||||||| ||||||||||   |||||||||| ||||||||||||||||||||||||||||||| | |||| |||| ||||| | ||||||||||||| ||    
T  10335216 ctagaacataacaaaaattaattaaactaatttaattacaattcagaaaacccaaatttgttttcccgcggacacgcttcaaggaaaacatcaagcacac 10335315  T
Q  430 atcatatctcctttg 444  Q
    |||||||||||||||    
T  10335316 atcatatctcctttg 10335330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 41951266 - 41951378
Alignment:
Q  331 ctagaacttaacaaaaatgg-ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaac 429  Q
    ||||||| ||||||||||   |||||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||| | |||| |||||||| ||    
T  41951266 ctagaacataacaaaaattaattaaactaatttaattacaattca-aaaacccaaatttgtttcc-cgcggacacacttcaaggaaaatatcaagcacac 41951363  T
Q  430 atcatatctcctttg 444  Q
    |||||||||||||||    
T  41951364 atcatatctcctttg 41951378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 18285327 - 18285410
Alignment:
Q  363 aattacaattcagaaaa-cccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatca-tatctcctttg 444  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  18285327 aattacaattcagaaaaacccaattttgtttccccgcgtacacacttcaagcaaaacatcaagcatacatcattatctcctttg 18285410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 444
Target Start/End: Original strand, 41942251 - 41942365
Alignment:
Q  331 ctagaacttaacaaaaatgg-ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaac 429  Q
    ||||||| ||||||||||   |||||||||| ||||||||||||| ||||  ||||||||||| | |||| |||| ||||| | |||| |||||||| ||    
T  41942251 ctagaacataacaaaaattaattaaactaatttaattacaattcaaaaaattcaaatttgttttcccgcggacacgcttcaaggaaaatatcaagcacac 41942350  T
Q  430 atcatatctcctttg 444  Q
    |||||||||||||||    
T  41942351 atcatatctcctttg 41942365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 30152507 - 30152305
Alignment:
Q  51 ttctaaaacttgatctcctattttcagcagcattaacaaggactttagagtaatcatcaac-ataacaggaggaacaatttgacgttcatgttga----a 145  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||   |||| | |||||||||||||||||||| |||    |    
T  30152507 ttctaaaatttgatctcctattttcagcagcattaacaaggactttagagtcatcattaactgaaacatgtggaacaatttgacgttcatgctgaatata 30152408  T
Q  146 taaccatcgaannnnnnnnatttaagctagataaaggatcttataccagaatttatgacttaacaacactgaatt-ttcatgaagaccatttaaaaaacg 244  Q
    ||||||  ||         ||| ||||||| |||||||||| ||| |||||||| |||||||||| | ||||||| ||||| ||||||| | ||||||||    
T  30152407 taaccactgagaaaattttattcaagctaggtaaaggatctaatagcagaatttgtgacttaacagcgctgaattcttcattaagaccagtcaaaaaacg 30152308  T
Q  245 aat 247  Q
    |||    
T  30152307 aat 30152305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 22404765 - 22404682
Alignment:
Q  363 aattacaattcagaaaa-cccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatca-tatctcctttg 444  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  22404765 aattacaattcagaaaaacccaattttgtttccccgcgtacacacttcaagcaaaacatcaagcatacatcattatctcctttg 22404682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 426
Target Start/End: Complemental strand, 16331062 - 16330969
Alignment:
Q  332 tagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagca 426  Q
    ||||||||||||||||| ||||  ||||||||||||||||||| |||||||||| |||||||| || |||||| |||||   |||||||||||||    
T  16331062 tagaacttaacaaaaatagttattctaatctaattacaattca-aaaacccaaacttgtttccccgggtacacgcttcaatgaaaacatcaagca 16330969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 426
Target Start/End: Original strand, 16130238 - 16130331
Alignment:
Q  332 tagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagca 426  Q
    ||||||||||||||||| ||||  ||||||||||||||||||| |||||| ||| |||||||| || |||||| |||||   |||||||||||||    
T  16130238 tagaacttaacaaaaatagttattctaatctaattacaattca-aaaaccaaaacttgtttccccgggtacacgcttcaatgaaaacatcaagca 16130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 444
Target Start/End: Original strand, 29045686 - 29045754
Alignment:
Q  376 aaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||| || | ||||  |||||||||    
T  29045686 aaaacccatatttgtttccccgcgtacacacttcaagcaaaacatcaaacatagatcaagtctcctttg 29045754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 27976325 - 27976416
Alignment:
Q  351 ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    |||||||||| ||||||||||||| ||| ||||||||||||| | ||||||||| | |||  ||||||||| |||| ||||||| ||| |||||    
T  27976325 ttaaactaatttaattacaattca-aaaccccaaatttgttttc-cgcgtacacgcatcaatcaaaacatctagcacacatcatctcttctttg 27976416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 28062853 - 28062944
Alignment:
Q  351 ttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    |||||||||| ||||||||||||| ||| ||||||||||||| | ||||||||| | |||  ||||||||| |||| ||||||| ||| |||||    
T  28062853 ttaaactaatttaattacaattca-aaaccccaaatttgttttc-cgcgtacacgcatcaatcaaaacatctagcacacatcatctcttctttg 28062944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 434
Target Start/End: Complemental strand, 3004 - 2903
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    ||||||| |||||||| | ||||||||||| ||||||||||||| ||| ||||||||||||| | ||| ||||| | ||| ||||||||||||||| |||    
T  3004 ctagaacctaacaaaa-tagttaaactaatttaattacaattca-aaaccccaaatttgttttcccgcatacacgcatcaagcaaaacatcaagcacaca 2907  T
Q  431 tcat 434  Q
    ||||    
T  2906 tcat 2903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 13379243 - 13379331
Alignment:
Q  343 aaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatc 432  Q
    |||||| ||||||||||  |||||||||||||||||||| ||||||| |||| || |||||| ||||| |||||||| |||||| |||||    
T  13379243 aaaaatagttaaactaagttaattacaattcagaaaacctaaatttg-ttccccgagtacacgcttcaagcaaaacaccaagcacacatc 13379331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 13379131 - 13379189
Alignment:
Q  248 tgtaacgtcctgaattttgatccaagacattatgtataattctttcttcttaaaaaaaa 306  Q
    ||||||||||| |||||||||||||||||||| || ||| |||||||| ||| ||||||    
T  13379131 tgtaacgtcctaaattttgatccaagacattacgtctaactctttctttttagaaaaaa 13379189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 108823 - 108755
Alignment:
Q  376 aaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaacatcatatctcctttg 444  Q
    |||| |||||||||||||| |||| |||||||||| ||| ||||||||||| ||||||||||| |||||    
T  108823 aaaaaccaaatttgtttccccgcgaacacacttcaagcacaacatcaagcacacatcatatcttctttg 108755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 34999 - 35095
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    |||||||||||||||| | |||||| |||| ||||||||||||| |||||| ||||||||| ||| || ||||| ||||| ||||||||||||||| |||    
T  34999 ctagaacttaacaaaa-tagttaaa-taatttaattacaattcaaaaaacc-aaatttgttccct-gcatacacgcttcaagcaaaacatcaagcacaca 35094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 147631 - 147727
Alignment:
Q  331 ctagaacttaacaaaaatggttaaactaatctaattacaattcagaaaacccaaatttgtttcctcgcgtacacacttcaggcaaaacatcaagcaaaca 430  Q
    |||||||||||||||| | |||||| |||| ||||||||||||| |||||| ||||||||| ||| || ||||| ||||| ||||||||||||||| |||    
T  147631 ctagaacttaacaaaa-tagttaaa-taatttaattacaattcaaaaaacc-aaatttgttccct-gcatacacgcttcaagcaaaacatcaagcacaca 147726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University