View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_25 (Length: 444)

Name: NF3929_low_25
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_25
NF3929_low_25
[»] scaffold0049 (3 HSPs)
scaffold0049 (221-434)||(59362-59575)
scaffold0049 (37-174)||(59622-59759)
scaffold0049 (1-45)||(59780-59824)
[»] chr7 (14 HSPs)
chr7 (236-425)||(5853927-5854116)
chr7 (1-41)||(14197538-14197578)
chr7 (1-48)||(27508736-27508783)
chr7 (33-85)||(27508797-27508849)
chr7 (37-85)||(45012855-45012903)
chr7 (1-44)||(36150976-36151019)
chr7 (17-58)||(6441488-6441529)
chr7 (8-49)||(15272394-15272435)
chr7 (17-58)||(27508670-27508711)
chr7 (33-82)||(38761002-38761051)
chr7 (37-85)||(5080115-5080163)
chr7 (6-42)||(5080187-5080223)
chr7 (45-85)||(15000879-15000919)
chr7 (37-85)||(15272329-15272377)
[»] chr5 (9 HSPs)
chr5 (1-85)||(34419640-34419724)
chr5 (1-42)||(20429955-20429996)
chr5 (1-49)||(17497155-17497203)
chr5 (37-85)||(21211423-21211471)
chr5 (1-48)||(30852739-30852786)
chr5 (6-48)||(10760080-10760122)
chr5 (1-43)||(13753306-13753348)
chr5 (37-85)||(17497220-17497268)
chr5 (37-85)||(21943749-21943797)
[»] chr8 (10 HSPs)
chr8 (1-48)||(25149310-25149357)
chr8 (37-85)||(12106873-12106921)
chr8 (1-48)||(12106939-12106986)
chr8 (1-48)||(23976163-23976210)
chr8 (3-48)||(21124521-21124566)
chr8 (1-46)||(21185822-21185867)
chr8 (17-58)||(31253998-31254039)
chr8 (17-58)||(35202692-35202733)
chr8 (37-85)||(21185887-21185935)
chr8 (33-85)||(22469439-22469491)
[»] chr4 (15 HSPs)
chr4 (1-48)||(18830646-18830693)
chr4 (2-48)||(22017954-22018000)
chr4 (32-85)||(10757576-10757629)
chr4 (32-85)||(10970747-10970800)
chr4 (2-46)||(2232446-2232490)
chr4 (37-85)||(22017888-22017936)
chr4 (1-48)||(2063306-2063353)
chr4 (1-42)||(5324761-5324802)
chr4 (32-85)||(47463820-47463873)
chr4 (1-48)||(5448356-5448403)
chr4 (1-48)||(37694972-37695019)
chr4 (17-58)||(2634168-2634209)
chr4 (26-58)||(10757691-10757723)
chr4 (26-58)||(10970862-10970894)
chr4 (2-42)||(18500759-18500799)
[»] chr6 (8 HSPs)
chr6 (236-434)||(6211835-6212033)
chr6 (37-85)||(10587893-10587941)
chr6 (37-85)||(19295287-19295335)
chr6 (33-85)||(26705249-26705301)
chr6 (1-48)||(10587959-10588006)
chr6 (1-48)||(13536721-13536768)
chr6 (1-48)||(26705188-26705235)
chr6 (21-58)||(19295397-19295434)
[»] scaffold0102 (2 HSPs)
scaffold0102 (1-46)||(24052-24097)
scaffold0102 (17-58)||(23986-24027)
[»] scaffold0018 (2 HSPs)
scaffold0018 (36-85)||(72135-72184)
scaffold0018 (1-48)||(72042-72089)
[»] chr3 (11 HSPs)
chr3 (37-85)||(26498554-26498602)
chr3 (37-85)||(15031445-15031493)
chr3 (37-85)||(38498328-38498376)
chr3 (1-48)||(26498620-26498667)
chr3 (1-48)||(39541770-39541817)
chr3 (1-34)||(7300137-7300170)
chr3 (3-48)||(11989117-11989162)
chr3 (37-82)||(20759152-20759197)
chr3 (32-85)||(21514964-21515017)
chr3 (32-85)||(48755333-48755386)
chr3 (1-49)||(20759087-20759135)
[»] chr2 (4 HSPs)
chr2 (37-85)||(32092765-32092813)
chr2 (1-48)||(22093020-22093067)
chr2 (325-398)||(5066130-5066203)
chr2 (2-42)||(31820075-31820115)
[»] chr1 (4 HSPs)
chr1 (37-85)||(37608196-37608244)
chr1 (2-48)||(50335602-50335648)
chr1 (1-48)||(11633290-11633337)
chr1 (1-48)||(13735605-13735653)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-40)||(27569-27608)
[»] scaffold0011 (1 HSPs)
scaffold0011 (37-82)||(190187-190232)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-58)||(314204-314241)


Alignment Details
Target: scaffold0049 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 221 - 434
Target Start/End: Complemental strand, 59575 - 59362
Alignment:
Q  221 caattctgtttgaacttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  59575 caattctgtttgaacttacccaatcaagcatagctcctttctggttagcagctttcccaaattcaagagctctttgtccagaaatcaattcaagcagaag 59476  T
Q  321 aattccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcaca 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59475 aattccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcaca 59376  T
Q  421 tgtgagtctctgtg 434  Q
    ||||||||||||||    
T  59375 tgtgagtctctgtg 59362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 59759 - 59622
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtgcctattttagaacaagtggctcttttatgtactcagtacaacaagacaaat 136  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59759 cattcagggactaaagtgactacacctttcccattgagggactaaagtgcctattttagaacaagtggctcttttatgtactcagtacaacaagacaaat 59660  T
Q  137 gatttgaagtgttggtgagtgcatacttgtctattatt 174  Q
    |||||||||||||||||||||||||||||| |||||||    
T  59659 gatttgaagtgttggtgagtgcatacttgtatattatt 59622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 59824 - 59780
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcaggg 45  Q
    |||| |||||||| |||||||||| |||||| |||||||||||||    
T  59824 gtcaatttagtccctgaaattgactaacagagtctacattcaggg 59780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 425
Target Start/End: Original strand, 5853927 - 5854116
Alignment:
Q  236 ttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaagaattccaaatccaaa 335  Q
    |||||||||||||||| |||||||| |||||||| ||||| || ||||| |  ||||| || || |  || || ||||| |||||||| || || |||||    
T  5853927 ttacccaatcaagcatggctcctttttggttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaaa 5854026  T
Q  336 tacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcacatgtga 425  Q
     ||||| || ||||| |||||||||||||| || || ||||| || || || || |||||||||||||||||||| ||||| ||||||||    
T  5854027 cacatcagtcttctcggaggattgtcctgtggacagatattccggtgcaatatgccctacagttcctctcactgcagttgtgacatgtga 5854116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14197578 - 14197538
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattc 41  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  14197578 gtcactttagtccctgaaattgaccaacagaatctacattc 14197538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27508736 - 27508783
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  27508736 gtcactttagtccatgaaattgactaacagagtctacattcagggact 27508783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 27508797 - 27508849
Alignment:
Q  33 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  27508797 tctacgttcagggactaaagtgactactccttttccattcagggattaaagtg 27508849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 45012903 - 45012855
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| ||||||    
T  45012903 cattcagagactaaagtgactactcctttcccattcagggaccaaagtg 45012855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36150976 - 36151019
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagg 44  Q
    |||| |||||||||||||||||||||||| | ||||||||||||    
T  36150976 gtcattttagtccttgaaattgaccaacaaagtctacattcagg 36151019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 6441488 - 6441529
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  6441488 aaattgactaacagagtctgcattcagggactaaattgacta 6441529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 15272435 - 15272394
Alignment:
Q  8 tagtccttgaaattgaccaacagaatctacattcagggacta 49  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  15272435 tagtccctgaaattgaccaacaaagtctacattcagggacta 15272394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 27508711 - 27508670
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  27508711 aaattgactaacagagtctgcattcagggactaaattgacta 27508670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 38761051 - 38761002
Alignment:
Q  33 tctacattcagggactaaattgactacacctttcccattcagggactaaa 82  Q
    |||||||||| | |||||| |||||||  |||||||||||||||||||||    
T  38761051 tctacattcacgaactaaagtgactacttctttcccattcagggactaaa 38761002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 5080163 - 5080115
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||| |||||| |||||||   |||||||||||||||||||||||    
T  5080163 cattcaggaactaaagtgactacttttttcccattcagggactaaagtg 5080115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 5080223 - 5080187
Alignment:
Q  6 tttagtccttgaaattgaccaacagaatctacattca 42  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  5080223 tttagtccttgaaattgactaacagagtctacattca 5080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 15000879 - 15000919
Alignment:
Q  45 gactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  15000879 gactaaagtgactactcatttcccattcagggactaaagtg 15000919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 15272377 - 15272329
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||| |||||| |||||||||||    
T  15272377 cattcagggactaaaatgactactcatttctcattcacggactaaagtg 15272329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 34419640 - 34419724
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||| |||||||| ||||||||||||||| | ||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||    
T  34419640 gtcattttagtccctgaaattgaccaacaaagtctacattcagggactaaagtgactactcctttctcattcaaggattaaagtg 34419724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20429996 - 20429955
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattca 42  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  20429996 gtcactttagtccttgaaattgaccaacagagtctacattca 20429955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17497155 - 17497203
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggacta 49  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  17497155 gtcactttagtccctgaaattgaccaacaaagtctacattcagggacta 17497203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21211471 - 21211423
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  21211471 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 21211423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30852739 - 30852786
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  30852739 gtcactttagttcatgaaattgaccaacagagtctacaatcagggact 30852786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 10760122 - 10760080
Alignment:
Q  6 tttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||||||||||||||||||||||| | | ||||||||||||||    
T  10760122 tttagtccttgaaattgaccaacaaagtttacattcagggact 10760080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13753348 - 13753306
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcag 43  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||    
T  13753348 gtcactttagtccctgaaattgaccaacagagtctacactcag 13753306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 17497220 - 17497268
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||| |||||| |||||||||||    
T  17497220 cattcagggactaaaatgactactcatttctcattcacggactaaagtg 17497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 21943797 - 21943749
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||| |||||| ||||||| | ||||||||||| |||||||||||    
T  21943797 cattcaggtactaaagtgactactcatttcccattcaaggactaaagtg 21943749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25149357 - 25149310
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25149357 gtcactttagtccttgaaattgaccaacagagtctacattcagggact 25149310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 12106921 - 12106873
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  12106921 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 12106873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12106986 - 12106939
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  12106986 gtcactttagtccctgaaattgaccaacagagtctacatccagggact 12106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23976210 - 23976163
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||| ||| |||||||||| |||||| ||||||||||||||||    
T  23976210 gtcactttactccctgaaattgactaacagagtctacattcagggact 23976163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 21124521 - 21124566
Alignment:
Q  3 cactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||| | ||||||||||||||| |||||||||| |||||    
T  21124521 cactttagtccataaaattgaccaacagagtctacattcaaggact 21124566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21185822 - 21185867
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcaggga 46  Q
    ||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  21185822 gtcactttagtccatgaaattgaccaacagagtctatatttaggga 21185867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 31254039 - 31253998
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  31254039 aaattgactaacagagtctgcattcagggactaaattgacta 31253998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 35202733 - 35202692
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| |||||||||| |||||||| |||||||||||||    
T  35202733 aaattgactaacagaatctgcattcaggaactaaattgacta 35202692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 21185887 - 21185935
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||| ||||||| ||||||||||    
T  21185887 cattcagggactaaagtgactactcatttctcattcagcgactaaagtg 21185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 22469491 - 22469439
Alignment:
Q  33 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||||||| || ||| || |||| ||||||||||||||||| |||||||    
T  22469491 tctacattcaggaacgaaagtggctactcctttcccattcagggattaaagtg 22469439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18830693 - 18830646
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18830693 gtcactttagtccctgaaattgaccaacagaatctacattcagggact 18830646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 22018000 - 22017954
Alignment:
Q  2 tcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22018000 tcactttagtccttgaaattgaccaacagaatatacattcagggact 22017954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 10757629 - 10757576
Alignment:
Q  32 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  10757629 atctacattcagggactaaagtgactactcatttctcattcagggactaaagtg 10757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 10970800 - 10970747
Alignment:
Q  32 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  10970800 atctacattcagggactaaagtgactactcatttctcattcagggactaaagtg 10970747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 2232490 - 2232446
Alignment:
Q  2 tcactttagtccttgaaattgaccaacagaatctacattcaggga 46  Q
    |||||||||||| |||||||||||||||||||||||||| |||||    
T  2232490 tcactttagtccctgaaattgaccaacagaatctacattgaggga 2232446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 22017936 - 22017888
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  22017936 cattcagggactaaagtgactactcctttcccattcagggattaaagtg 22017888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2063306 - 2063353
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||    
T  2063306 gtcactttagtctttaaaattgaccaacagagtctacattcagggact 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5324802 - 5324761
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattca 42  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  5324802 gtcactttagtccctgaaattgaccaacagagtctacattca 5324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 47463873 - 47463820
Alignment:
Q  32 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||    
T  47463873 atctgcattcagggactaaagtgactactcatttcccatccagggactaaagtg 47463820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5448356 - 5448403
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||| | ||||||||||||||||| | ||||||||||||||    
T  5448356 gtcactttagttcctgaaattgaccaacagagtttacattcagggact 5448403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37695019 - 37694972
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||  | ||||||||||||| ||||||||||||||||||    
T  37695019 gtcactttagtcacttaaattgaccaacacaatctacattcagggact 37694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 2634168 - 2634209
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  2634168 aaattgacgaacagagtctgcattcagggactaaattgacta 2634209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 10757691 - 10757723
Alignment:
Q  26 aacagaatctacattcagggactaaattgacta 58  Q
    |||||| ||||||||||||||||||||||||||    
T  10757691 aacagagtctacattcagggactaaattgacta 10757723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 10970862 - 10970894
Alignment:
Q  26 aacagaatctacattcagggactaaattgacta 58  Q
    |||||| ||||||||||||||||||||||||||    
T  10970862 aacagagtctacattcagggactaaattgacta 10970894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 18500759 - 18500799
Alignment:
Q  2 tcactttagtccttgaaattgaccaacagaatctacattca 42  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  18500759 tcactttagtctctgaaattgaccaacagtatctacattca 18500799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 434
Target Start/End: Original strand, 6211835 - 6212033
Alignment:
Q  236 ttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaagaattccaaatccaaa 335  Q
    ||||||||||||||||  ||||||| ||||| || ||||| || |||||||| || ||    || |  ||||||||||| || | ||| |||||||||||    
T  6211835 ttacccaatcaagcatgactcctttttggttggctgcttttccaaattcaagggccctcaaacctgtgatcaattcaagaagcaaaatgccaaatccaaa 6211934  T
Q  336 tacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcacatgtgagtctctgtg 434  Q
     ||||| || || || || ||||||||||| || || || ||||| ||||| || ||||| || || |||||||| ||||| |||||||| ||| ||||    
T  6211935 aacatcagtcttttcagaagattgtcctgtggaaagatactcaggagctatatgccctactgtccccctcactgcagttgttacatgtgaatctttgtg 6212033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 10587941 - 10587893
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| |||||| |||||| |||||||||||    
T  10587941 cattcagggactaaagtgactactcctttctcattcatggactaaagtg 10587893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 19295335 - 19295287
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| ||||||| ||||| |||||||||||    
T  19295335 cattcagggactaaagtgactactcctttcctattcaaggactaaagtg 19295287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 26705249 - 26705301
Alignment:
Q  33 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||||||| ||||||| | ||| ||||||||| |||||||||    
T  26705249 tctacattcagggactaaagtgactactctttttccattcaggaactaaagtg 26705301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10588006 - 10587959
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| ||||||||| ||||| | ||||||||||||||||    
T  10588006 gtcactttagtccctgaaattgaacaacatagtctacattcagggact 10587959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13536721 - 13536768
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| |||||| |||||| ||| ||||||||||||||||    
T  13536721 gtcactttagtccctgaaatggaccaatagagtctacattcagggact 13536768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26705188 - 26705235
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||    
T  26705188 gtcactttagtccctgaaattgaccaacaacgtctacattcagggact 26705235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 19295397 - 19295434
Alignment:
Q  21 tgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||||||| || ||||||||||||||||||||||||||    
T  19295397 tgaccaacggagtctacattcagggactaaattgacta 19295434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24052 - 24097
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcaggga 46  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  24052 gtcacttttgtccatgaaattgaccaacagaatctacattcaggga 24097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 24027 - 23986
Alignment:
Q  17 aaattgaccaacagaatctacattcagggactaaattgacta 58  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  24027 aaattgaccaacagagtctgcattcagggactaaattgacta 23986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 72135 - 72184
Alignment:
Q  36 acattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  72135 acattcagggactaaagtgactacttctttcccattcagggactaaagtg 72184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 72042 - 72089
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||| |||||||| |||||||||||| || ||||||||||||||||||    
T  72042 gtcaatttagtccctgaaattgaccatcaaaatctacattcagggact 72089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 26498602 - 26498554
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  26498602 cattcagggactaaagtgactactcttttcccattcagggactaaagtg 26498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 15031445 - 15031493
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  15031445 cattcagagactaaagtgactactcatttcccattcagggactaaagtg 15031493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 38498328 - 38498376
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| |||||| |||||||||| |||||||    
T  38498328 cattcagggactaaagtgactactcctttctcattcagggattaaagtg 38498376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26498667 - 26498620
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||    
T  26498667 gtcactttagtccctgaaattgaccaacatggtctacattcagggact 26498620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39541770 - 39541817
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  39541770 gtcacttttgtccttaaaattgaccaacagagtctacattcagagact 39541817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 7300170 - 7300137
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatc 34  Q
    |||||||||||||||||| |||||||||||||||    
T  7300170 gtcactttagtccttgaatttgaccaacagaatc 7300137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 11989162 - 11989117
Alignment:
Q  3 cactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||  ||||||||||||||||| |||| |||||||||||    
T  11989162 cactttagtctctgaaattgaccaacagagtctatattcagggact 11989117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 20759152 - 20759197
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaa 82  Q
    |||||| |||||||| ||||||| |||||| |||||||||||||||    
T  20759152 cattcaaggactaaaatgactactcctttctcattcagggactaaa 20759197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 21514964 - 21515017
Alignment:
Q  32 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||| |||||||| ||||||| | ||||| |||||||||| ||||||    
T  21514964 atctacattcaaggactaaaatgactactcatttccaattcagggacaaaagtg 21515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 48755386 - 48755333
Alignment:
Q  32 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    |||| ||||||| ||||||| |||| || ||||||| |||||||||||||||||    
T  48755386 atctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtg 48755333  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20759087 - 20759135
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggacta 49  Q
    ||||||||||||| |||||||||| |||| | |||||||||| ||||||    
T  20759087 gtcactttagtccctgaaattgactaacaaagtctacattcaaggacta 20759135  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 32092813 - 32092765
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  32092813 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 32092765  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22093020 - 22093067
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  22093020 gtcactttagtccctgaatttgaccaacagaatctacattcagagact 22093067  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 5066203 - 5066130
Alignment:
Q  325 ccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagt 398  Q
    ||||||||||| ||||||||||| || || || ||||| ||||| || || || ||||| ||||||||||||||    
T  5066203 ccaaatccaaaaacatctgttttttcagaagactgtccagttgagagatactcgggggcaatgtgtcctacagt 5066130  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 31820075 - 31820115
Alignment:
Q  2 tcactttagtccttgaaattgaccaacagaatctacattca 42  Q
    |||||||||||| | |||||||| |||||||||||||||||    
T  31820075 tcactttagtccctaaaattgactaacagaatctacattca 31820115  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 37608196 - 37608244
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaagtg 85  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  37608196 cattcagggactaaaatgactactcctttcccattcaaggactaaagtg 37608244  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 50335602 - 50335648
Alignment:
Q  2 tcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||||    
T  50335602 tcactttagtccctaaaattgaccaacagagtctacattcagggact 50335648  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11633290 - 11633337
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacattcagggact 48  Q
    ||||||||||||||||||||||||||| ||| ||| |||| |||||||    
T  11633290 gtcactttagtccttgaaattgaccaatagagtctgcatttagggact 11633337  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13735605 - 13735653
Alignment:
Q  1 gtcactttagtccttgaaattga-ccaacagaatctacattcagggact 48  Q
    ||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  13735605 gtcactttagtccctgaaattgatcaaacagagtctacattcagggact 13735653  T

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Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27608 - 27569
Alignment:
Q  1 gtcactttagtccttgaaattgaccaacagaatctacatt 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  27608 gtcactttagtccttgaaattgaccaacagagtctacatt 27569  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 190232 - 190187
Alignment:
Q  37 cattcagggactaaattgactacacctttcccattcagggactaaa 82  Q
    ||||||| ||||||| ||||||| | ||||||||||||||||||||    
T  190232 cattcagagactaaaatgactactcttttcccattcagggactaaa 190187  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 314241 - 314204
Alignment:
Q  21 tgaccaacagaatctacattcagggactaaattgacta 58  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  314241 tgactaacagactctacattcagggactaaattgacta 314204  T

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