View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_26 (Length: 442)

Name: NF3929_low_26
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_26
NF3929_low_26
[»] chr4 (3 HSPs)
chr4 (259-425)||(5230525-5230691)
chr4 (15-181)||(5230687-5230855)
chr4 (59-97)||(43061682-43061720)
[»] chr8 (4 HSPs)
chr8 (179-246)||(8056859-8056926)
chr8 (179-246)||(17137272-17137339)
chr8 (195-246)||(443678-443729)
chr8 (29-95)||(11556955-11557021)
[»] chr7 (3 HSPs)
chr7 (179-246)||(6936318-6936385)
chr7 (285-383)||(25338328-25338426)
chr7 (180-246)||(35574989-35575055)
[»] chr1 (2 HSPs)
chr1 (179-246)||(11562462-11562529)
chr1 (180-246)||(15103544-15103610)
[»] chr5 (3 HSPs)
chr5 (180-246)||(18626225-18626291)
chr5 (45-97)||(18542220-18542272)
chr5 (45-97)||(26208015-26208067)
[»] chr3 (3 HSPs)
chr3 (196-246)||(16310987-16311037)
chr3 (196-246)||(18487771-18487821)
chr3 (196-246)||(18491981-18492031)
[»] chr2 (2 HSPs)
chr2 (209-246)||(23059252-23059289)
chr2 (194-246)||(44176721-44176773)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 259 - 425
Target Start/End: Complemental strand, 5230691 - 5230525
Alignment:
Q  259 gagttagagtgtgtgaaaacttactgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230691 gagttagagtgtgtgaaaacttactgtggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaag 5230592  T
Q  359 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5230591 aaaattgtttatctatgtatggacagcttttatctgagtataaaggctttattgaactgttaaatat 5230525  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 5230855 - 5230687
Alignment:
Q  15 gacacagccaccagacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacatgtcggatacaag 114  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5230855 gacacagccaccggacacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgttacgtgtcagatacaag 5230756  T
Q  115 atgcacctttggtccgaactccaaagtattggtgcggc--atagaagatgaataaaatgaacatgagtt 181  Q
    || ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  5230755 atacacctttggtccgaactccaaagtattggtgcgacatatagaagatgaataaaatgaacatgagtt 5230687  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 43061720 - 43061682
Alignment:
Q  59 aatttgagaaaatataactaattgaatgtaaccacatgt 97  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  43061720 aatttgagaaaatataaataattgaatgtaacaacatgt 43061682  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 8056859 - 8056926
Alignment:
Q  179 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  8056859 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 8056926  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 17137272 - 17137339
Alignment:
Q  179 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  17137272 gttttgtttgaattggtttgtatgcggttcaggcttctcctggcttttatttgattttctagctttat 17137339  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 443678 - 443729
Alignment:
Q  195 tttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||| ||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  443678 tttgcatgcggttcaggcttctcctgtcttttatttgaatttatagctttat 443729  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 11557021 - 11556955
Alignment:
Q  29 acacaacacttacatgtcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacat 95  Q
    |||||||||| |||||| || |||  ||| ||||||||||||| ||| | |||||||||||||||||    
T  11557021 acacaacactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 6936385 - 6936318
Alignment:
Q  179 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  6936385 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgattttctagctttat 6936318  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 383
Target Start/End: Complemental strand, 25338426 - 25338328
Alignment:
Q  285 tggcaaggtacaatcttctggctgccactcccaatgaagataatcagaatcattccttccattcttgacacaagaaaattgtttatctatgtatggaca 383  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||  | || ||||| || | ||||||||||||| | ||||| ||||||||    
T  25338426 tggcaaggtgcaatcttctggctgccactcccaatgttgataatcagaatctgttctaccattttttatacaagaaaattgtctttctatatatggaca 25338328  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 35575055 - 35574989
Alignment:
Q  180 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||| ||||| || ||||||||  |||| ||| ||||||| ||||||||| |||||||||||||||    
T  35575055 ttttgcttgaactgttttgtatgcagttcgggcctctcctgacttttatttaaatttctagctttat 35574989  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 11562529 - 11562462
Alignment:
Q  179 gttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  11562529 gttttgtttgaattggtttgtatgcggttcaggcttctcctgacttttatttgaatttctagcgttat 11562462  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 15103544 - 15103610
Alignment:
Q  180 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||| |||||||| ||| |||| |||||||||||||| || ||||||| |||| ||||||||||||    
T  15103544 ttttgcttgaattgttttatatgcggttcaggcttctcatgacttttatgtgaacttctagctttat 15103610  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 18626291 - 18626225
Alignment:
Q  180 ttttgtttgaattggtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||| |||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||    
T  18626291 ttttgcttgaattgttttgtatgcggttcaggcttctccggacttttatttaaatttctagctttat 18626225  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 18542272 - 18542220
Alignment:
Q  45 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 97  Q
    |||| |||| ||| |||||||||||||| || ||||||||||||| |||||||    
T  18542272 tcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatgt 18542220  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 26208067 - 26208015
Alignment:
Q  45 tcgataccattaaaaatttgagaaaatataactaattgaatgtaaccacatgt 97  Q
    ||||||| ||||| |||||||||||||| || |  ||||||||||||||||||    
T  26208067 tcgatactattaataatttgagaaaataaaagtgtttgaatgtaaccacatgt 26208015  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 16310987 - 16311037
Alignment:
Q  196 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  16310987 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 16311037  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 18487771 - 18487821
Alignment:
Q  196 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18487771 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18487821  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 18491981 - 18492031
Alignment:
Q  196 ttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18491981 ttgtatggggttcaagcttctcctggcttttatttgaatttctagccttat 18492031  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 23059252 - 23059289
Alignment:
Q  209 aggcttctcctggcttttatttgaatttctagctttat 246  Q
    |||||||||||| |||||||||||||||||||||||||    
T  23059252 aggcttctcctgacttttatttgaatttctagctttat 23059289  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 44176721 - 44176773
Alignment:
Q  194 gtttgtatgtggttcaggcttctcctggcttttatttgaatttctagctttat 246  Q
    ||||||||| ||||||||| || ||||||||||  ||||||||||||||||||    
T  44176721 gtttgtatgaggttcaggcatcacctggctttttattgaatttctagctttat 44176773  T

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