View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_28 (Length: 436)
Name: NF3929_low_28
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 39226420 - 39226011
Alignment:
| Q |
17 |
catttcagaagattgaatatggaagtgaagacatcttaggatgtgtaaaggaaagtaacatcataggaagaggaggtgctggtgttgtatatggaggaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39226420 |
catttcagaagattgaatatggaagtgaagacatcttaggatgtgtaaaggaaagtaacatcataggaagaggaggtgctggtgttgtatatggaggaac |
39226321 |
T |
|
| Q |
117 |
aatgccaaatggagaaaaagtagctgtgaaaaagttattaggaattaacaaaggttgttcttatgataacggtttatcagctgaaataaaaacacttggt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39226320 |
aatgccaaatggagaaaaagtagctgtgaaaaagttattaggaattaacaaaggttgttcttatgataatggtttatcagctgaaataaaaacacttggt |
39226221 |
T |
|
| Q |
217 |
agaataaggcacagatacattgtgaagttgttagcattttgttcaaatagagacactaatttgcttgtttatgagtacatgacaaatggtagtttaggtg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39226220 |
agaataaggcacagatacattgtgaagttgttagcattttgttcaaatagagacactaatttgcttgtttatgagtacatgacaaatggtagtttaggtg |
39226121 |
T |
|
| Q |
317 |
aagtgttgcatgggaaaagaggggggtttcttgagtgggatgttagggtgaaaatagcaactgaagctgctaaaggactttgctatttgcaccatgattg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39226120 |
aagtgttgcatgggaaaagaggggggtttcttgagtgggatgttagggtgaaaatagcaactgaagctgctaaaggactttgctatttgcaccatgattg |
39226021 |
T |
|
| Q |
417 |
ttgtcctttg |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
39226020 |
ttgtcctttg |
39226011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 16734796 - 16735206
Alignment:
| Q |
17 |
catttcagaagattgaatatggaagtgaagacatcttaggatgtgtaaaggaaagtaacatcataggaagaggaggtgctggtgttgtatatggaggaac |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| |||| || |||||||||| || | ||||||||||| || || |||||||| || |||||| |
|
|
| T |
16734796 |
catttcagaagatggaatatggaagtgaagaaatcataggttgcataaaggaaagcaatgtgataggaagaggtggagcaggtgttgtgtacaaaggaac |
16734895 |
T |
|
| Q |
117 |
aatgccaaatggagaaaaagtagctgtgaaaaagttattaggaattaacaaagg------ttgttcttatg---ataacggtttatcagctgaaataaaa |
207 |
Q |
| |
|
||||||||||||||| || | |||||||| || || |||||||| |||||||| || |||| ||| ||||||| || ||||| ||||| || |
|
|
| T |
16734896 |
aatgccaaatggagatgaaattgctgtgaagaaattgttaggaatcaacaaaggaaattcttcttctcatgccgataacggcttttcagcagaaattaag |
16734995 |
T |
|
| Q |
208 |
acacttggtagaataaggcacagatacattgtgaagttgttagcattttgttcaaatagagacactaatttgcttgtttatgagtacatgacaaatggta |
307 |
Q |
| |
|
||| | |||||||| || ||||| || ||||| | |||| | ||||||||| |||| | ||| || ||||||||||||||||| |||||| |||||||| |
|
|
| T |
16734996 |
acattaggtagaatcagacacaggtatattgttaggttggttgcattttgtacaaacaaagaaacaaatttgcttgtttatgattacatggaaaatggta |
16735095 |
T |
|
| Q |
308 |
gtttaggtgaagtgttgcatgggaaaagaggggggtttcttgagtgggatgttagggtgaaaatagcaactgaagctgctaaaggactttgctatttgca |
407 |
Q |
| |
|
| | |||||||| |||||||| |||||||| | |||| | | ||| |||||||| ||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
16735096 |
gccttggtgaagttttgcatggaaaaagaggtgagtttttgaaatggaatgttaggttgaaaattgctgttgaagctgctaaaggactttgttatttgca |
16735195 |
T |
|
| Q |
408 |
ccatgattgtt |
418 |
Q |
| |
|
|||||||||| |
|
|
| T |
16735196 |
tcatgattgtt |
16735206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 418
Target Start/End: Original strand, 26735925 - 26735964
Alignment:
| Q |
379 |
gaagctgctaaaggactttgctatttgcaccatgattgtt |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26735925 |
gaagctgctaagggactttgctatttgcaccatgattgtt |
26735964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 36941954 - 36941918
Alignment:
| Q |
277 |
ttgcttgtttatgagtacatgacaaatggtagtttag |
313 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
36941954 |
ttgcttgtgtatgagtacatgccaaatggtagtttag |
36941918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University