View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_3 (Length: 891)
Name: NF3929_low_3
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 63 - 657
Target Start/End: Original strand, 8340681 - 8341272
Alignment:
| Q |
63 |
ctagtacatttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacact |
162 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8340681 |
ctagtatatttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacact |
8340780 |
T |
|
| Q |
163 |
ccacggctgttagtttgccatcactaaagatgttgatgatcgacattggttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtat |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8340781 |
ccacggctgttagtttgccatcactaaagatgttgatgatcgacattggttatgttgaagtatcttctgtgaatgcacttcttgatggctgctcaagtat |
8340880 |
T |
|
| Q |
263 |
agaaattctggatctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttgga |
362 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8340881 |
agaaattctggatcttggcttttcagcccaaagcttggataaagtttgtgtcccgccttccttgaaaaggttgaaaatcaccattgagaatgatgttgga |
8340980 |
T |
|
| Q |
363 |
gcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtgg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8340981 |
gcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtgg |
8341080 |
T |
|
| Q |
463 |
aagcgtatcttgatgtctttcccacgtcgcttggttccatcgtccctttgcacaacctctttggcgctctctctggggcaaaacatctcatgttgagtcg |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8341081 |
aagcgtatcttgatgtctttcccacgtcgcttggttccatcgtacctttgcacaacctctttggcgctctctctggggcaaaacatctcatgttgagtcg |
8341180 |
T |
|
| Q |
563 |
ttcaacaaccaaaggttaaggtttttctttagtcattttacgtttacctcttcatttatatagagttagtacctaaccaataataaatcattaag |
657 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8341181 |
ttcaacaacc-aaggttaaggtttttctttagtcattttacgtttacctcttcatt--tatagagttagtacctaaccaataataaatcattaag |
8341272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 713 - 873
Target Start/End: Original strand, 8341332 - 8341492
Alignment:
| Q |
713 |
gtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctc |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8341332 |
gtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctc |
8341431 |
T |
|
| Q |
813 |
gttcttccctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctcc |
873 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8341432 |
gttctttcctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctcc |
8341492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 3e-63; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 70 - 572
Target Start/End: Original strand, 17477635 - 17478135
Alignment:
| Q |
70 |
atttgatttgtttggtttctgaattgtgatatataacattttcttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacactccacggc |
169 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||| || | | ||||||| ||||||||| ||||| | || ||| | |||||||||||| |||| |
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|
| T |
17477635 |
atttgatttttttggtttctgaattgtgatata--acacttacatatttgttcctcagtctctgtggtgaaatttgtgttaacatccaacactctacggt |
17477732 |
T |
|
| Q |
170 |
tgttagtttgccatcactaaagatgttgatgatcgacattggttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtatagaaatt |
269 |
Q |
| |
|
||||||| || |||||||||||| || | ||| | |||||| || |||||| |||| | |||||||| || ||||||| ||| ||||||| | |
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|
| T |
17477733 |
gattagtttaccgtcactaaagatgctgctaatcaatattggtcatatggaagtaccttccattaatgcactcctctgtggctgcccaaatatagaatct |
17477832 |
T |
|
| Q |
270 |
ctggatctttgcttttcagcccaaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttact |
369 |
Q |
| |
|
||| ||||| ||||||| | |||||||| || |||||||| || | ||| ||||||||||| | ||||||||| | | |||| |||||| |||||| |
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|
| T |
17477833 |
ctgaatcttggcttttctccgcaaagcttagacaaagtttgcatcccacctcccttgaaaaggcttaaaatcaccgtagcaaatgttgttggggcttacc |
17477932 |
T |
|
| Q |
370 |
tggaagtaaatgcgccggatcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgta |
469 |
Q |
| |
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| ||| ||||||| ||| ||||| | ||||||||||||||| ||||||||||||| ||| ||||| | |||| | ||||| ||| |||||||||||||| |
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|
| T |
17477933 |
ttgaaataaatgcaccgaatcttgagtaccttaacattaccggaatcacattcggccaagttttcaccatgtataacttgcacaatgtggtggaagcgta |
17478032 |
T |
|
| Q |
470 |
tcttgatgtctttcccacgtcgcttggttccatcgtccctttgcacaacctctttggcgctctctctggggcaaaacatctcatgttgagtcgttcaaca |
569 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||| ||||| ||| |||| |||||||||||| | |||||| | ||||||||| ||||||| |
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|
| T |
17478033 |
tcttgatgtctttccccaatcgcttggttccgtcgtcgctttacacaatctccttggtgctctctctgggactaaacatttagtgttgagtcattcaaca |
17478132 |
T |
|
| Q |
570 |
acc |
572 |
Q |
| |
|
||| |
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|
| T |
17478133 |
acc |
17478135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 298 - 574
Target Start/End: Complemental strand, 4427826 - 4427550
Alignment:
| Q |
298 |
tggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaata |
397 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||||||||| | ||||| |||||| ||||| ||||| |||||| | ||| | || || ||||||||| | || |
|
|
| T |
4427826 |
tggataaagtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagta |
4427727 |
T |
|
| Q |
398 |
ccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttcccacgtcgcttggt |
497 |
Q |
| |
|
|||| |||| | | |||||||| |||||||| ||| ||| |||||| ||||| ||| ||||||||||| ||||| |||| |||| | | || || | |
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|
| T |
4427726 |
cctttacatcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagcacatcttaatgtttttctccagccgttttct |
4427627 |
T |
|
| Q |
498 |
tccatcgtccctttgcacaacctctttggcgctctctctggggcaaaacatctcatgttgagtcgttcaacaaccaa |
574 |
Q |
| |
|
||| || |||||||| |||||||| |||| |||||||||| | |||||||| ||||| |||||||||||||||| |
|
|
| T |
4427626 |
tccgtcatccctttgaacaacctccttggaaatctctctgggactaaacatctagtgttgggtcgttcaacaaccaa |
4427550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 713 - 865
Target Start/End: Original strand, 17478279 - 17478431
Alignment:
| Q |
713 |
gtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctc |
812 |
Q |
| |
|
|||||||||| || ||| | || ||||||||||||||||||| ||||||||||| | | ||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
17478279 |
gtactaattagtagttggtgtcttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctagagctc |
17478378 |
T |
|
| Q |
813 |
gttcttccctggtttaactcaaattctcttctccacttgattcagaaatgtcc |
865 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||| |||| ||||||||||||| |
|
|
| T |
17478379 |
attcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtcc |
17478431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 291 - 485
Target Start/End: Complemental strand, 29585551 - 29585354
Alignment:
| Q |
291 |
caaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatg---ttggagcttacttggaagtaaatgcgccgg |
387 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| | |||||| |||| ||| |||| |||||| |||| | |||| | ||| |||||||||| | |
|
|
| T |
29585551 |
caaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgatgaagttggggtttaccttgaaataaatgcgcctg |
29585452 |
T |
|
| Q |
388 |
atcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttccc |
485 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||| ||| | | ||||||| |||||| ||| | ||| || ||||||||||||||||||||||||||| |
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|
| T |
29585451 |
atcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttacacaaagtcgtggaagcgtatcttgatgtctttccc |
29585354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 713 - 828
Target Start/End: Complemental strand, 32849388 - 32849272
Alignment:
| Q |
713 |
gtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagct |
811 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||| | |||||||||||| | | |||||||||||||| ||||| ||||||| ||||| |
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|
| T |
32849388 |
gtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagct |
32849289 |
T |
|
| Q |
812 |
cgttcttccctggttta |
828 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
32849288 |
cattcttccctggttta |
32849272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 713 - 837
Target Start/End: Original strand, 4441976 - 4442100
Alignment:
| Q |
713 |
gtactaattactacttgatatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctc |
812 |
Q |
| |
|
||||||||| |||||||||| ||| || ||||||||||||| |||||||| | ||| | ||||||||||||||| |||||| ||| | |||||| |
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|
| T |
4441976 |
gtactaattgctacttgataatgtggacgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcatttagagctc |
4442075 |
T |
|
| Q |
813 |
gttcttccctggtttaactcaaatt |
837 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
4442076 |
attcttccctggtttaactccaatt |
4442100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 24935062 - 24935109
Alignment:
| Q |
319 |
cttccttgaaaaggttaaaaatcaccattgagaatgatgttggagctt |
366 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||| |||| |
|
|
| T |
24935062 |
cttccttgaagaggttaaaaatcactgttgagaatgatgttggggctt |
24935109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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