View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_35 (Length: 405)
Name: NF3929_low_35
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 6514162 - 6513782
Alignment:
| Q |
11 |
cagagacggacacacgagttgacggttggtctgtnnnnnnnnntacttttttaatgtatatttctgacaattttgttataaaaaactatgttcttgttat |
110 |
Q |
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| T |
6514162 |
cagagacggacacacgagttgatggttggtctgtaaaaaa---tacttttttaatgtatatttttgacaattttgttataaaaaactatgttcttgttat |
6514066 |
T |
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| Q |
111 |
ttnnnnnnnntggtaacaaataaatatgtggtcaaaacaagcttat----gagacaaatccaacactatcaacataattaaaaaataaaacatcgtaatt |
206 |
Q |
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| T |
6514065 |
ttaaaaaaaatggtaacaaataaatatgtggtcaaaacaagcttatatatgagacaaatccaacactatcaacataattaaaaaataaaacattgtaatt |
6513966 |
T |
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| Q |
207 |
aatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaactaaaactcaccgacataaaacaaatctcaatgaatctaacaaccaag |
306 |
Q |
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| T |
6513965 |
aatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaactaaaactcaccgacctaaaacaaatctcaatgaatctaacaaccaag |
6513866 |
T |
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| Q |
307 |
gagttggagcggaggcaatgacgatccctagtaagcacaatggaagcagtgctcttctcactgtctcattaaaagagtttcttt |
390 |
Q |
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| T |
6513865 |
gagttggagcggaggcaatgacgatccctagtaagcacaacagaagcagtgctctcctcactgtctcattaaaagagtttcttt |
6513782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 39854098 - 39854026
Alignment:
| Q |
144 |
aaaacaagcttatgagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagca |
216 |
Q |
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| T |
39854098 |
aaaacaagcttatgagacaaatccaacatcatcaacatagttaagaaatacaacatcacaattaatagcagca |
39854026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 13055950 - 13056058
Alignment:
| Q |
121 |
tggtaacaaataaatatgtggtcaaaacaagcttatgagacaaatccaacactatcaacataattaa-aaaataaaacatcgtaattaatagtagcaatg |
219 |
Q |
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||||| ||||||||| |||||| | ||||||||| |||||||||||||||| |||||||||||||| ||||| ||| ||| |||| ||||| | ||||| |
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| T |
13055950 |
tggtatcaaataaatttgtggtagatacaagcttaggagacaaatccaacaccatcaacataattaacaaaatcaaa-atcataatcaatagcaacaatg |
13056048 |
T |
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| Q |
220 |
ccaccattat |
229 |
Q |
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|||| ||||| |
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| T |
13056049 |
ccacaattat |
13056058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 32918369 - 32918287
Alignment:
| Q |
176 |
caacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatttaacaagtctcaaa |
258 |
Q |
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|||||||||||| |||| | |||| |||||||||| | |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
32918369 |
caacataattaacaaatgtagcatcataattaatagcaataatgtgaccattataaatccaacaacattaaacaagtctcaaa |
32918287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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