View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_36 (Length: 404)
Name: NF3929_low_36
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 36333641 - 36333301
Alignment:
| Q |
18 |
ataaaaatgctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagcgtgctcactgaattttgagaatgttgaagtccatttgac |
117 |
Q |
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| T |
36333641 |
ataaaaatgctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagtgtgctcactgaattttgagaatgttgaagtccatttgac |
36333542 |
T |
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| Q |
118 |
catttttcagtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttgtgaactgtttctttagacttgtgtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36333541 |
catttttcagtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttgtgaactgtttctttagacttgtgtta |
36333442 |
T |
|
| Q |
218 |
gagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatgagtcactttttaatgtgnnnnnnnnctttgataagtactcaaaagattctcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
36333441 |
gagaaacacaagttttcactatatcaagtgaagagtgtgtgagaatgagtcactttttaatgcgaaaaaaaactttgataagtactcaaaagattctcac |
36333342 |
T |
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| Q |
318 |
tttgnnnnnnngttagtacaacataatactactagtatcct |
358 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
36333341 |
tttgtttttttgttagtacaacataatactactagtatcct |
36333301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 321
Target Start/End: Original strand, 2629670 - 2629701
Alignment:
| Q |
290 |
ctttgataagtactcaaaagattctcactttg |
321 |
Q |
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| T |
2629670 |
ctttgataagtactcaaaagattctcactttg |
2629701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 321
Target Start/End: Original strand, 22979591 - 22979622
Alignment:
| Q |
290 |
ctttgataagtactcaaaagattctcactttg |
321 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22979591 |
ctttgataagtactcaaaagattctcactttg |
22979622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 23808813 - 23808782
Alignment:
| Q |
290 |
ctttgataagtactcaaaagattctcactttg |
321 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23808813 |
ctttgataagtactcaaaagattctcactttg |
23808782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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