View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_38 (Length: 394)
Name: NF3929_low_38
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 47627189 - 47627565
Alignment:
| Q |
16 |
ttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgatttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47627189 |
ttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgatttt |
47627288 |
T |
|
| Q |
116 |
ggcatggcaaggatggtagctatagaacaagttcaaggacatacaaatagagttgtgggcacatagtgagtttcaaatcattatctttaccattctaata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47627289 |
ggcatggcaaggatggtagctatagaacaagttcaaggacatacaaatagagttgtgggcacatagtgagtttcaaatcattacctttaccattctaata |
47627388 |
T |
|
| Q |
216 |
tttgtatcaaatatgaag-nnnnnnnnngaacaaaatcaaatatgaagtgttatttatcttaatcaattatttattattttgcaatatatttagaagaaa |
314 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47627389 |
tttgtatcaaatatgaagttttttttttgaacaaaatcaaatatgaagtgttatttatcttaatcatttatttattattttgcaatatatttagaagaaa |
47627488 |
T |
|
| Q |
315 |
aaacttgtcattccttttaactttttcgagtattctattggcattcttaaatttgagttttgatcctatgctactac |
391 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
47627489 |
aaacttgtcattccttttaacttttttgagtattctattggcattcttaaatttgagttttgatcctctgcaactac |
47627565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 47584291 - 47584416
Alignment:
| Q |
16 |
ttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgatttt |
115 |
Q |
| |
|
|||||| |||||||||||||| ||||| || ||||| |||||| ||||||| |||||||| | |||||| || ||||| |||||||| || |||||| |
|
|
| T |
47584291 |
ttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagatttt |
47584390 |
T |
|
| Q |
116 |
ggcatggcaaggatggtagctataga |
141 |
Q |
| |
|
|||||||| || || ||| ||||||| |
|
|
| T |
47584391 |
ggcatggctagaattgtatctataga |
47584416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 47574598 - 47574698
Alignment:
| Q |
23 |
catgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatgg |
122 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||||| | ||||| ||| |||| || ||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
47574598 |
catgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatgg |
47574697 |
T |
|
| Q |
123 |
c |
123 |
Q |
| |
|
| |
|
|
| T |
47574698 |
c |
47574698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 47593041 - 47593147
Alignment:
| Q |
23 |
catgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatgg |
122 |
Q |
| |
|
|||||| ||||||||||||| ||||||| || ||| | ||||| || |||||||| || ||| | ||||||||||| ||||| || |||||||| |||| |
|
|
| T |
47593041 |
catgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgttctactggatgaaaatatgaatcctaaaatatcagattttggaatgg |
47593140 |
T |
|
| Q |
123 |
caaggat |
129 |
Q |
| |
|
| ||||| |
|
|
| T |
47593141 |
ctaggat |
47593147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 47698431 - 47698521
Alignment:
| Q |
92 |
atgaatccaaaaatctctgattttggcatggcaaggatggtagctatagaacaagttcaaggacatacaaatagagttgtgggcacatagt |
182 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||| ||| |||| |||| || |||| |||||||||| |||| || ||||||| |
|
|
| T |
47698431 |
atgaatcctaaaatatctgatttcggcatggcaagaatggtggctctagatcaagatcgaggaagtacaaatagaattgttggaacatagt |
47698521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 2662539 - 2662479
Alignment:
| Q |
66 |
caagcaatgttcttctagataacaatatgaatccaaaaatctctgattttggcatggcaag |
126 |
Q |
| |
|
|||||||||||||| ||||| | | |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
2662539 |
caagcaatgttcttttagatggcgaaatgaatccaaaaatttctgactttggaatggcaag |
2662479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University