View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_39 (Length: 394)
Name: NF3929_low_39
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 833317 - 832947
Alignment:
| Q |
14 |
atgttgacacattagaaacggtagaagaggaagaggatgaagatgatataaatttcgatgataatggtcaacaagcccaacaaattgtgggtttgttgga |
113 |
Q |
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| T |
833317 |
atgttgacacattagaaacggtagaagaggaagaggaagaagatgatagaaatttcgatgataatggtcaacaagcccaacaaattgcgggtttgttgga |
833218 |
T |
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| Q |
114 |
gaaattagaaaataattatcgttcttctcacaaaataggacaatgttcaatttgtttggaggagttttgcactgaattagaacttgcttatacaaaatgc |
213 |
Q |
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| T |
833217 |
gaaattagaaaataattatcattcttctcacaaaataggacaatgttcaatttgtttggaggagttttgcaccgaattagaacttgcttatacaaaatgc |
833118 |
T |
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| Q |
214 |
tcacacgtttttcataaaaaatgcatcggtccatggatccaaaaatgcatcaaccgttcctcatcatattcttgtccattgtgtagaggtcaaataattt |
313 |
Q |
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| T |
833117 |
tcacatgtttttcatcaaaaatgcattcgtccatggatccaaaaatgcatcaaccgttcctcatcatattcttgtccattgtgtagaggtcaaataattt |
833018 |
T |
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| Q |
314 |
gaacatggaaggaattacttggtgattattttttattttaagaagttgtttaattgcttttcggccctatg |
384 |
Q |
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| T |
833017 |
gaacatggaaggaattacttggtgattattttttattttaagaagttgtttaattgcttttcggctctatg |
832947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 70 - 334
Target Start/End: Complemental strand, 16539950 - 16539686
Alignment:
| Q |
70 |
gatgataatggtcaacaagcccaacaaattgtgggtttgttggagaaattagaaaataattatcgttcttctcacaaaataggacaatgttcaatttgtt |
169 |
Q |
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| T |
16539950 |
gatgataatggccaacaagtccaacaaattatgggtttgttggaaaatttagaaaataattgtccttctcgtgactttggagagcagtgttcaatttgtt |
16539851 |
T |
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| Q |
170 |
tggaggagttttgcactgaattagaacttgcttatacaaaatgctcacacgtttttcataaaaaatgcatcggtccatggatccaaaaatgcatcaaccg |
269 |
Q |
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| T |
16539850 |
tggaggagttttgtactaagtcagaacttgcttatacaaaatgctcacatgtctttcataaagaatgtattgttccatggattcaggaatgcgtcaacaa |
16539751 |
T |
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| Q |
270 |
ttcctcatcatattcttgtccattgtgtagaggtcaaataatttgaacatggaaggaattacttg |
334 |
Q |
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| T |
16539750 |
ttcatcttcttactcttgtccattgtgtagaagttatataatatgaacaatgaaggaattacttg |
16539686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 70 - 334
Target Start/End: Complemental strand, 16530302 - 16530038
Alignment:
| Q |
70 |
gatgataatggtcaacaagcccaacaaattgtgggtttgttggagaaattagaaaataattatcgttcttctcacaaaataggacaatgttcaatttgtt |
169 |
Q |
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| T |
16530302 |
gatgataatggccaacaagtccaacaaattttgggtttgctggaaaatttagaaaataattgtccttctcgtgactttggagagcagtgttcaatttgtt |
16530203 |
T |
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| Q |
170 |
tggaggagttttgcactgaattagaacttgcttatacaaaatgctcacacgtttttcataaaaaatgcatcggtccatggatccaaaaatgcatcaaccg |
269 |
Q |
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| T |
16530202 |
tggaggagttttgtactaagtcggaacttgcttatacaaaatgctcacatgtctttcataaagaatgtattgttccatggattcaggtatgcgtcaacaa |
16530103 |
T |
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| Q |
270 |
ttcctcatcatattcttgtccattgtgtagaggtcaaataatttgaacatggaaggaattacttg |
334 |
Q |
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| T |
16530102 |
ttcatcttcttactcttgtccattgtgtagaagttacataatatgaacaatgaaggaattacttg |
16530038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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