View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_44 (Length: 373)
Name: NF3929_low_44
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_44 |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 10251434 - 10251089
Alignment:
| Q |
11 |
catcatcatattgtgcaaacctgtcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtcctt |
110 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10251434 |
catcatcatattgtgcaaacctatcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtcctt |
10251335 |
T |
|
| Q |
111 |
gttcctcacattgaaaaatccaacgaagccataaaattgaccacgagaattgaattgtctagctatatagatatcagacaaaataccacacacttcaaag |
210 |
Q |
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|||||||||||| ||||||| |||||||||||| | |||||||| ||||| | |||||| || | ||||| |||||||||||||||||||||||||||| |
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| T |
10251334 |
gttcctcacattcaaaaatctaacgaagccatagacctgaccacgtgaatttagttgtctggcaacatagacatcagacaaaataccacacacttcaaag |
10251235 |
T |
|
| Q |
211 |
tattgacggagacgaaacaacggcatataatcaggaatgtttgcaaaatagaaagtaattttactaccattgttatgtttgtcgtcgaagaaagcttttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10251234 |
tattgacggagacgaaacaacggcatataatcaggaatgtttgcaaaatagaaagtaattttactaccattgttatgtttgtcgtcgaagaagccttttc |
10251135 |
T |
|
| Q |
311 |
ccatgatagcatcagacccgcatctgtcgaaagccaaaccgttgtt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10251134 |
ccatgatagcatcagacccgcatctgtcgaaagccaaatcgttgtt |
10251089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 17192843 - 17193097
Alignment:
| Q |
14 |
catcatattgtgcaaacctgtcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtccttgtt |
113 |
Q |
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||||| ||||||||||||||||||| | ||||| | ||||| ||| || ||||||||||| |||||||||||| | ||| ||||| || |||| |
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| T |
17192843 |
catcaaattgtgcaaacctgtcaaacctagcttccctagcccaaaccctatgatcaccaatccagacattattcaaagcacttgccaatttttctatgtt |
17192942 |
T |
|
| Q |
114 |
cctcacattgaaaaatccaacgaagccataaaattgaccacgagaattgaattgtctagctatatagatatcagacaaaataccacacacttcaaagtat |
213 |
Q |
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||| ||||| ||||| |||||| || |||| |||||||||| |||||| || |||||| | ||| ||||||||||| ||||||||||| || || || |
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| T |
17192943 |
ccttacattctcaaatctaacgaaaccgtaaacttgaccacgataattgagttttctagcaacataaatatcagacaatataccacacacctcgaaaaat |
17193042 |
T |
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| Q |
214 |
tgacggagacgaaacaacggcatataatcaggaatgtttgcaaaatagaaagtaa |
268 |
Q |
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||||| ||||| ||||| |||||| | |||||||| || |||||||| ||||||| |
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| T |
17193043 |
tgacgtagacggaacaatggcatacagtcaggaatattagcaaaataaaaagtaa |
17193097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 22745509 - 22745703
Alignment:
| Q |
67 |
tcaccaatccatacattattcaaatcttgtgctaatttgtccttgttcctcacattgaaaaatccaacgaagccataaaattgaccacgagaattgaatt |
166 |
Q |
| |
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||||||||||| |||||||||||| |||| || ||||| || ||||||| ||||| || |||| ||| |||||||||| |||||||| ||||||| || |
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| T |
22745509 |
tcaccaatccaaacattattcaaagcttgggccaatttatctctgttcctaacattcaagaatcaaacaaagccataaacctgaccacgtgaattgagtt |
22745608 |
T |
|
| Q |
167 |
gtctagctatatagatatcagacaaaataccacacacttcaaagtattgacggagacgaaacaacggcatataatcaggaatgtttgcaaaatag |
261 |
Q |
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||||||||| || | |||||||| ||| || ||||||||||| ||| |||| | ||| || | ||||||| |||||||| || ||||||||| |
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| T |
22745609 |
gtctagctacgtatacatcagacagaatgccgcacacttcaaaatatcgacgtaaacggaatagcggcataaggtcaggaatattagcaaaatag |
22745703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 141214 - 141447
Alignment:
| Q |
24 |
tgcaaacctgtcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtccttgttcctcacattg |
123 |
Q |
| |
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|||||||||||| || ||||||||| ||||| ||| |||| ||||| ||||| |||||||||||| | | ||||| || || ||||| ||||||| |
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| T |
141214 |
tgcaaacctgtcgaaacgtgcttcacgtgcccaaaccctaaaatcacctatccacacattattcaaagcctacgctaacttcgccatgttcttcacattc |
141313 |
T |
|
| Q |
124 |
aaaaatccaacgaagccataaaattgaccacgagaattgaattgtctagctatatagatatcagacaaaataccacacacttcaaagtattgacggagac |
223 |
Q |
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| ||||| || || ||||||| ||||| || ||||| | ||||||||| ||||| | |||||||| || || || || || ||| |||| || | || |
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| T |
141314 |
agaaatcttacaaaaccataaacctgaccgcgtgaatttagttgtctagcaatatacacatcagacaggatgccgcatacctcgaagcattgtcgtaaac |
141413 |
T |
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| Q |
224 |
gaaacaacggcatataatcaggaatgtttgcaaa |
257 |
Q |
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| || || |||||| ||||||||||||||||||| |
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| T |
141414 |
ggaataatggcataaaatcaggaatgtttgcaaa |
141447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 19662481 - 19662758
Alignment:
| Q |
12 |
atcatcatattgtgcaaacctgtcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtccttg |
111 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||| ||||| | | || |||| |||||| ||||||||||| | |||||||||||||| | |
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| T |
19662481 |
atcatcatgatgcgcaaacctgtcaaaccttgcttcacgagcccaaaacctatgatcactgatccatgcattattcaaagcatgtgctaatttgtctata |
19662580 |
T |
|
| Q |
112 |
ttcctcacattgaaaaatccaacgaagccataaaattgaccacgagaattgaattgtctagctatatagatatcagacaaaataccacacacttcaaagt |
211 |
Q |
| |
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||||||| || ||||||| |||||||||||| | |||||||| ||||| | |||||| || | ||||| |||||||||||||||||||| ||||||| |
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| T |
19662581 |
ttcctcatatacaaaaatctaacgaagccatagacctgaccacgtgaatttagttgtctggcaacatagacatcagacaaaataccacacatctcaaagt |
19662680 |
T |
|
| Q |
212 |
attgacggagacgaaacaacggcatataatcaggaatgtttgcaaaatagaaagtaattttactaccattgttatgtt |
289 |
Q |
| |
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|||| || | ||| ||||| |||| | | || |||| || | |||||| ||||||| ||||| |||||||| |||| |
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| T |
19662681 |
attgtcgtaaacggaacaatggcagaaagtcgagaatattagtaaaataaaaagtaaccttactgccattgttgtgtt |
19662758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 446 - 627
Alignment:
| Q |
67 |
tcaccaatccatacattattcaaatcttgtgctaatttgtccttgttcctcacattgaaaaatccaacgaagccataaaattgaccacgagaattgaatt |
166 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||| || |||||| ||||||| ||||||| || || ||||||| |||||||| ||||| |||| |
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| T |
446 |
tcaccaatccacacattattcaaagcctgtgctaatttatctttgttcttcacattcaaaaatcttacaaaaccataaacctgaccacgtgaatttaatt |
545 |
T |
|
| Q |
167 |
gtctagctatatagatatcagacaaaataccacacacttcaaagtattgacggagacgaaacaacggcatataatcaggaat |
248 |
Q |
| |
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||| || | ||| | |||| | | ||| ||||||||||| | ||| | ||| | ||| ||||||| |||| | |||||||| |
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| T |
546 |
ttctggcaacatacacatcatatagaattccacacacttcgatgtactaacgtaaacggaacaacgacataaagtcaggaat |
627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 43316 - 43432
Alignment:
| Q |
14 |
catcatattgtgcaaacctgtcaaattttgcttcacgcgcccagaccttaaagtcaccaatccatacattattcaaatcttgtgctaatttgtccttgtt |
113 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| || || ||| || ||||||||||| |||||||||||| | |||||||||| || ||||| |
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| T |
43316 |
catcatattgtgcaaacctatcataccgtgcttcacgagcgcaaaccctatgttcaccaatccacacattattcaaagccagtgctaatttatctttgtt |
43415 |
T |
|
| Q |
114 |
cctcacattgaaaaatc |
130 |
Q |
| |
|
| ||||||| ||||||| |
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|
| T |
43416 |
cttcacattcaaaaatc |
43432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19003342 - 19003279
Alignment:
| Q |
67 |
tcaccaatccatacattattcaaatcttgtgctaatttgtccttgttcctcacattgaaaaatc |
130 |
Q |
| |
|
||||||||||||| |||||||||| | ||| ||||||| || |||||| ||||||| ||||||| |
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|
| T |
19003342 |
tcaccaatccataaattattcaaagcctgttctaatttatctttgttcttcacattcaaaaatc |
19003279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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