View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_45 (Length: 372)
Name: NF3929_low_45
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 50 - 362
Target Start/End: Original strand, 40810595 - 40810907
Alignment:
| Q |
50 |
tgtgtaaagtttgttgaagttcattgggccttcatatttttggcatacaaagcatttcttaacataagttgtaatgcaaaaggatgcacatcagaattgt |
149 |
Q |
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| T |
40810595 |
tgtgtaaagattcttgaagttcattgggccttcatatttttggcatacaaagcatttcttaacataagttgtaatgcaaaaggatgcacatcagaattgt |
40810694 |
T |
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| Q |
150 |
aatgtgaatctaattgtttctggtgtggtctgcagagaagtaattgtgttactagggtcttaacgtgatgcacttggttgtgatgcgtgtatttcagtag |
249 |
Q |
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| T |
40810695 |
caagtgcatctaattgtttctggtgtggtctgcagagaaggaattgtgttactagggtcttaacgtgatgcacttggttgtgatgcgtgtatttcagtag |
40810794 |
T |
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| Q |
250 |
ttatcttgagttgtttatctttttgaatgccacttctcatctgcttagaaagtattctcctggcttgattgttatgcctttgtgcaataatgtatgtttc |
349 |
Q |
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| T |
40810795 |
ttatcttgagttgtttatctttttgaatgccacttctcatctgcttagaaagtattctcctggcttgattgttatgcctttgtgcaataatgtatgtttc |
40810894 |
T |
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| Q |
350 |
tttgacatctctg |
362 |
Q |
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| T |
40810895 |
tttgacatttctg |
40810907 |
T |
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