View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_49 (Length: 365)
Name: NF3929_low_49
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 46161703 - 46162045
Alignment:
| Q |
7 |
tcgaagaatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
106 |
Q |
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| T |
46161703 |
tcgaataatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
46161802 |
T |
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| Q |
107 |
gttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatataatcatt |
206 |
Q |
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| T |
46161803 |
gtt-cgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatat---catt |
46161898 |
T |
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| Q |
207 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatataattatcttcttcggctgtcaactggggtgggaacaaatggcga |
306 |
Q |
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| T |
46161899 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaacaatatataattatcttcttcagctgtcaactggggtgggaacaaatggcga |
46161998 |
T |
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| Q |
307 |
agcctactttttgttca----atatgagaacataactgcatgttgct |
349 |
Q |
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| T |
46161999 |
agcctactttttgttcaatatatatgggaacataactgcatgttgct |
46162045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 96 - 263
Target Start/End: Original strand, 46169121 - 46169285
Alignment:
| Q |
96 |
cagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccac |
195 |
Q |
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| T |
46169121 |
cagtgctatttgttacgaaagatctatacaagaaataaagagaagaatgcataataataagagat-ttgactaatcaaattctatgttacatgctgctac |
46169219 |
T |
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| Q |
196 |
atataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
263 |
Q |
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| T |
46169220 |
atataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 46245279 - 46245212
Alignment:
| Q |
282 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgct |
349 |
Q |
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| T |
46245279 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgct |
46245212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 46254967 - 46254900
Alignment:
| Q |
282 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgct |
349 |
Q |
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| T |
46254967 |
caactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacatagctgcatgatgct |
46254900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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