View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_51 (Length: 360)
Name: NF3929_low_51
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 33506405 - 33506747
Alignment:
| Q |
1 |
tagttaacctgaataagaggatcgtcacaagccctgtctattaatctcccacgagcaagtaaacaaagcaaatgaaccttgtgcacaagttcagccaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506405 |
tagttaacctgaataagaggatcgtcacaagccctgtctattaatcttccacgagcaagtaaacaaagcaaatgaaccttgtgcacaagttcagccaatt |
33506504 |
T |
|
| Q |
101 |
cctaaagaattcacaaaaatatcatttttagtaactagcaaannnnnnn-gacataaagccaactccactcactaatgtttaaagataacaactgacctt |
199 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506505 |
cctaaaaaattcacaaaaatataatttttagtaactagcaaaaatttattgacataaagccaactccactcactaatgtttaaagataacaactgacctt |
33506604 |
T |
|
| Q |
200 |
gtcttcagcagaagctcggcgtatttgtttctttacagatgaatcaggggttacattcaattctattgtcatagattgatcatccatggcaactgtccca |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33506605 |
gtcttcagcagaagctcggcgtatttgtttctttacagatgaatcaggggttacattcaattctattgtcataggatgatcatccatggcaactgtccca |
33506704 |
T |
|
| Q |
300 |
tcttcccaatctgagtcatccagttcttcctttttatcaatgc |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33506705 |
tcttcccaatctgagtcatccagttcttcctttttatcaatgc |
33506747 |
T |
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