View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_61 (Length: 320)

Name: NF3929_low_61
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_61
NF3929_low_61
[»] chr3 (18 HSPs)
chr3 (164-310)||(44883223-44883369)
chr3 (1-137)||(44883396-44883538)
chr3 (240-291)||(2397944-2397995)
chr3 (238-291)||(15543157-15543210)
chr3 (238-291)||(20209253-20209306)
chr3 (238-291)||(28843890-28843943)
chr3 (238-291)||(44664779-44664832)
chr3 (238-291)||(46292740-46292793)
chr3 (238-291)||(6954155-6954208)
chr3 (238-291)||(11989673-11989726)
chr3 (238-291)||(14463225-14463278)
chr3 (238-291)||(18678016-18678069)
chr3 (238-291)||(21017024-21017077)
chr3 (238-291)||(29434459-29434512)
chr3 (238-291)||(31574356-31574409)
chr3 (238-291)||(44036844-44036897)
chr3 (238-291)||(45567511-45567564)
chr3 (251-291)||(49002351-49002391)
[»] chr8 (16 HSPs)
chr8 (238-291)||(43497365-43497418)
chr8 (237-291)||(2241573-2241627)
chr8 (238-291)||(26187231-26187284)
chr8 (240-290)||(2785918-2785968)
chr8 (238-288)||(12649641-12649691)
chr8 (238-291)||(29596505-29596558)
chr8 (238-291)||(33279039-33279092)
chr8 (238-291)||(42684946-42684999)
chr8 (238-290)||(10925261-10925313)
chr8 (238-291)||(1235687-1235740)
chr8 (238-291)||(17494881-17494934)
chr8 (238-291)||(21660885-21660938)
chr8 (238-291)||(27712867-27712920)
chr8 (238-291)||(28828374-28828427)
chr8 (238-291)||(29726685-29726738)
chr8 (251-291)||(36556651-36556691)
[»] chr1 (18 HSPs)
chr1 (238-291)||(24234695-24234748)
chr1 (238-291)||(8828737-8828790)
chr1 (238-291)||(17504201-17504254)
chr1 (238-291)||(35521378-35521431)
chr1 (238-291)||(48524649-48524702)
chr1 (238-291)||(1501677-1501730)
chr1 (238-291)||(4695039-4695092)
chr1 (238-291)||(5618229-5618282)
chr1 (238-291)||(6489030-6489083)
chr1 (238-291)||(12650080-12650133)
chr1 (238-275)||(16087076-16087113)
chr1 (238-291)||(34480342-34480395)
chr1 (242-291)||(35214055-35214104)
chr1 (238-291)||(39672994-39673047)
chr1 (238-291)||(44344182-44344235)
chr1 (238-291)||(45286335-45286388)
chr1 (238-291)||(45315414-45315467)
chr1 (244-310)||(45749327-45749395)
[»] chr7 (19 HSPs)
chr7 (237-288)||(41054695-41054746)
chr7 (237-291)||(10543569-10543623)
chr7 (237-291)||(43268031-43268085)
chr7 (247-291)||(48765970-48766014)
chr7 (238-291)||(7149449-7149502)
chr7 (238-291)||(19104376-19104429)
chr7 (238-291)||(46738367-46738420)
chr7 (244-291)||(8949450-8949497)
chr7 (238-291)||(7173034-7173087)
chr7 (238-291)||(8522427-8522480)
chr7 (238-291)||(8805902-8805955)
chr7 (238-291)||(11337995-11338048)
chr7 (238-291)||(31115901-31115954)
chr7 (238-291)||(34287619-34287672)
chr7 (238-291)||(38495017-38495070)
chr7 (238-291)||(41922440-41922493)
chr7 (238-291)||(45055480-45055533)
chr7 (238-291)||(45062165-45062218)
chr7 (238-291)||(45867548-45867601)
[»] chr2 (18 HSPs)
chr2 (236-291)||(14951854-14951909)
chr2 (238-291)||(1270212-1270265)
chr2 (238-291)||(1650606-1650659)
chr2 (238-291)||(10192188-10192241)
chr2 (238-291)||(11724775-11724828)
chr2 (238-275)||(29154237-29154274)
chr2 (238-275)||(2415499-2415536)
chr2 (238-291)||(9027183-9027236)
chr2 (238-291)||(9912015-9912068)
chr2 (238-291)||(11723864-11723917)
chr2 (238-291)||(17549172-17549225)
chr2 (238-291)||(23926494-23926547)
chr2 (238-291)||(29421796-29421849)
chr2 (238-291)||(31556850-31556903)
chr2 (238-291)||(33274500-33274553)
chr2 (238-291)||(42950622-42950675)
chr2 (239-275)||(18508629-18508665)
chr2 (251-291)||(26499569-26499609)
[»] chr5 (21 HSPs)
chr5 (237-291)||(12875768-12875822)
chr5 (238-291)||(14871892-14871945)
chr5 (238-277)||(35160600-35160639)
chr5 (238-291)||(16736961-16737014)
chr5 (238-291)||(18707428-18707481)
chr5 (238-291)||(40952226-40952279)
chr5 (239-291)||(1098996-1099048)
chr5 (248-291)||(3168251-3168294)
chr5 (244-291)||(33429691-33429738)
chr5 (238-288)||(34159280-34159330)
chr5 (238-291)||(2426387-2426440)
chr5 (238-291)||(2960997-2961050)
chr5 (238-291)||(2969465-2969518)
chr5 (238-291)||(3279291-3279344)
chr5 (238-291)||(3974316-3974369)
chr5 (238-291)||(13697421-13697474)
chr5 (238-291)||(24858561-24858614)
chr5 (238-291)||(31486060-31486113)
chr5 (238-291)||(37092282-37092335)
chr5 (238-274)||(7610366-7610402)
chr5 (251-291)||(32772107-32772147)
[»] chr4 (20 HSPs)
chr4 (238-291)||(23963005-23963058)
chr4 (238-291)||(49498528-49498581)
chr4 (238-291)||(54036967-54037020)
chr4 (237-291)||(53563281-53563335)
chr4 (238-291)||(5618223-5618276)
chr4 (238-291)||(26886713-26886766)
chr4 (238-291)||(41935651-41935704)
chr4 (241-291)||(18635946-18635996)
chr4 (238-291)||(5747978-5748031)
chr4 (238-291)||(10993783-10993836)
chr4 (238-291)||(20984017-20984070)
chr4 (238-291)||(23572704-23572757)
chr4 (238-291)||(26948142-26948195)
chr4 (238-291)||(30637104-30637157)
chr4 (238-291)||(46648172-46648225)
chr4 (238-275)||(50512661-50512698)
chr4 (238-291)||(52654035-52654088)
chr4 (251-291)||(32188030-32188070)
chr4 (251-291)||(52537995-52538035)
chr4 (238-274)||(54997032-54997068)
[»] scaffold0200 (1 HSPs)
scaffold0200 (238-291)||(4520-4573)
[»] scaffold0119 (1 HSPs)
scaffold0119 (238-291)||(41437-41490)
[»] chr6 (14 HSPs)
chr6 (238-291)||(9546569-9546622)
chr6 (238-291)||(11361892-11361945)
chr6 (238-291)||(13853300-13853353)
chr6 (238-291)||(17853801-17853854)
chr6 (248-291)||(4137380-4137423)
chr6 (238-291)||(1925219-1925272)
chr6 (238-291)||(2316592-2316645)
chr6 (238-291)||(3012071-3012124)
chr6 (238-291)||(9220206-9220259)
chr6 (238-291)||(21926222-21926275)
chr6 (238-291)||(22568866-22568919)
chr6 (238-291)||(28852291-28852344)
chr6 (236-291)||(25026133-25026189)
chr6 (251-291)||(25121655-25121695)
[»] scaffold0024 (1 HSPs)
scaffold0024 (238-289)||(107960-108010)
[»] scaffold0077 (1 HSPs)
scaffold0077 (238-291)||(10077-10130)
[»] scaffold0009 (1 HSPs)
scaffold0009 (238-291)||(258858-258911)
[»] scaffold0592 (1 HSPs)
scaffold0592 (251-291)||(8504-8544)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 44883369 - 44883223
Alignment:
Q  164 atgcactgaacatagcagaagacataaaaaccaacaaactattatgtcctttaactaaatttttgaaactacagattttcaagcttcaaattcatgtttt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44883369 atgcactgaacatagcagaagacataaaaaccaacaaactattatgtcctttaactaaatttttgaaactatagattttcaagcttcaaattcatgtttt 44883270  T
Q  264 tattttcttatggcttttcaatcttcaactatggtatttcacctatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44883269 tattttcttatggcttttcaatcttcaactatggtatttcatctatg 44883223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44883538 - 44883396
Alignment:
Q  1 cccaagtatatggattcatttcagagttaattaatagttaagtactaaaccccaagtaatttttgcatgaaa---------ggtctggatgtgtagtcag 91  Q
    ||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  44883538 cccaactatatggattcatttcagagttaa---atagttaagtactaaaccccaagtaatttttgcatgaaatagcagaaaggtctggatgtgtagtcag 44883442  T
Q  92 gcacatgagagttgaaatttagacacaagaaatggtagaatgagaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44883441 gcacatgagagttgaaatttagacacaagaaatggtagaatgagaa 44883396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 2397995 - 2397944
Alignment:
Q  240 tttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  2397995 tttcaagcttcaaattcatggttttattttcttatgacatttcaatcttcaa 2397944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 15543210 - 15543157
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  15543210 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 15543157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 20209253 - 20209306
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  20209253 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 20209306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 28843943 - 28843890
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  28843943 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 28843890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 44664832 - 44664779
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  44664832 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 44664779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 46292793 - 46292740
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  46292793 atttttaagcttgaaattcatgattttattttcttatggtctttcaatcttcaa 46292740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 6954208 - 6954155
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  6954208 attttaaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 6954155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 11989726 - 11989673
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  11989726 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 11989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 14463225 - 14463278
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||  ||||||||||||||||| |||||||||||||    
T  14463225 atttttaagtttaaaattcattattttattttcttatggcctttcaatcttcaa 14463278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 18678016 - 18678069
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  18678016 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 18678069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 21017024 - 21017077
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  21017024 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 21017077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 29434512 - 29434459
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  | |||||||||||    
T  29434512 atttttaagcttaaaattcatgattttattttcttatggtctatcaatcttcaa 29434459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 31574356 - 31574409
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  31574356 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 31574409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 44036897 - 44036844
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  44036897 atttttaagtttaaaattcatgattttattttcttatggtatttcaatcttcaa 44036844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 45567511 - 45567564
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||| ||||||||||||  |||||||||||||    
T  45567511 atttttaagcttaaaattcatgatttcattttcttatggtctttcaatcttcaa 45567564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 49002351 - 49002391
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  49002351 aaattcatgattttattttcttatggtctttcaatcttcaa 49002391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 43497418 - 43497365
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  43497418 attttcaagcttcaaattcatggttttatttttttatggcatttcaatcttcaa 43497365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 2241573 - 2241627
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||    
T  2241573 gattttcaagcttcaaattcatggttttattttcttatggcctcccaatcttcaa 2241627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 26187231 - 26187284
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  26187231 attttcaagcttcaaattcatggttttatttttttatggccttccaatcttcaa 26187284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 2785968 - 2785918
Alignment:
Q  240 tttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttca 290  Q
    |||||||||| ||||| ||||||||||||||||||||| | ||||||||||    
T  2785968 tttcaagcttaaaatttatgtttttattttcttatggcctctcaatcttca 2785918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 12649691 - 12649641
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatctt 288  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||||||    
T  12649691 attttcaaacttcaaattcatggttttattttcttatggtctttcaatctt 12649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 29596505 - 29596558
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  29596505 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 29596558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 33279039 - 33279092
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  33279039 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 33279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 42684999 - 42684946
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  42684999 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 42684946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 10925313 - 10925261
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttca 290  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||||||||||    
T  10925313 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttca 10925261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 1235687 - 1235740
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  1235687 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 1235740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 17494934 - 17494881
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  17494934 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 17494881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 21660938 - 21660885
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  21660938 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 21660885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 27712867 - 27712920
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  27712867 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 27712920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 28828427 - 28828374
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  28828427 atttttaagcttaaaattcatgcttttattttcttatggtctttcagtcttcaa 28828374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 29726738 - 29726685
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||| ||| ||||||||||||||||  |||||||||||||    
T  29726738 atttttaagcttaaaatttatgattttattttcttatggtctttcaatcttcaa 29726685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 36556651 - 36556691
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  36556651 aaattcatgattttattttcttatggtctttcaatcttcaa 36556691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 24234748 - 24234695
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  24234748 attttcaagcttcaaattcatggttttattttctaatggcatttcaatcttcaa 24234695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 8828790 - 8828737
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  8828790 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 8828737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 17504254 - 17504201
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  17504254 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 17504201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 35521431 - 35521378
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||| | ||||||| |||||||||||||||| |||||| |||||||    
T  35521431 attttcaagcttaacattcatgattttattttcttatggtttttcagtcttcaa 35521378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 48524702 - 48524649
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  48524702 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 48524649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 1501730 - 1501677
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  1501730 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 1501677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 4695039 - 4695092
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| || ||| ||||||||| ||||||||||||||||  |||||||||||||    
T  4695039 atttttaaacttaaaattcatgattttattttcttatggtctttcaatcttcaa 4695092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 5618282 - 5618229
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  5618282 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 5618229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 6489083 - 6489030
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  6489083 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 6489030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 12650133 - 12650080
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  12650133 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 12650080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Original strand, 16087076 - 16087113
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatg 275  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  16087076 attttcaaacttcaaattcatggttttattttcttatg 16087113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 34480395 - 34480342
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  34480395 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 34480342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 35214104 - 35214055
Alignment:
Q  242 tcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||| |||||| |||||||||| |||||| ||||||| |||||    
T  35214104 tcaagcttcaagttcatggttttattttcgtatggcctttcaatattcaa 35214055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 39673047 - 39672994
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  39673047 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 39672994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 44344235 - 44344182
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  44344235 atttttaagcttaaaattcatgattttattttcttatggtatttcagtcttcaa 44344182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 45286335 - 45286388
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||| |  |||||||||||||    
T  45286335 atttttaagcttaaaattcatgattttattttcttatcgtctttcaatcttcaa 45286388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 45315467 - 45315414
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  45315467 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 45315414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 45749327 - 45749395
Alignment:
Q  244 aagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa--ctatggtatttcacctatg 310  Q
    |||||||||||||||| ||| ||||| ||||| | |||||||||||||   |||||||||||| |||||    
T  45749327 aagcttcaaattcatgatttcattttgttatgacatttcaatcttcaaatatatggtatttcatctatg 45749395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 41054695 - 41054746
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatctt 288  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  41054695 gattttcaagcttcaaatttatggttttattttcttatggcctttcaatctt 41054746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 10543623 - 10543569
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||    
T  10543623 gattttcaagcttcaaatttatggttttaatttcttatggcctttcaatcttcaa 10543569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 43268031 - 43268085
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||    
T  43268031 gattttcaagctttaaatttatggttttattttcttatggcatttcaatcttcaa 43268085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 48765970 - 48766014
Alignment:
Q  247 cttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  48765970 cttcaaattcatggttttattttcttatggcatttcaatcttcaa 48766014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 7149502 - 7149449
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  7149502 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 7149449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 19104376 - 19104429
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||| |||||| |||||||    
T  19104376 atttttaagcttaaaattcatgattttattttcttatggtttttcagtcttcaa 19104429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 46738367 - 46738420
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  46738367 attttaaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 46738420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 8949497 - 8949450
Alignment:
Q  244 aagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  8949497 aagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 8949450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 7173034 - 7173087
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  7173034 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 7173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 8522427 - 8522480
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  8522427 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 8522480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 8805955 - 8805902
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  8805955 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 8805902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 11337995 - 11338048
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||   ||||||||||||    
T  11337995 atttttaagcttaaaattcatgattttattttcttatggtccttcaatcttcaa 11338048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 31115901 - 31115954
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  31115901 attttgaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 31115954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 34287619 - 34287672
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||   |||||||||||||    
T  34287619 atttttaagcttaaaattcatgattttattttcttatgatctttcaatcttcaa 34287672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 38495017 - 38495070
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  38495017 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 38495070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 41922493 - 41922440
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  41922493 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 41922440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 45055533 - 45055480
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  45055533 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 45055480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 45062165 - 45062218
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  45062165 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 45062218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 45867548 - 45867601
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||   |||||||||||||    
T  45867548 atttttaagcttaaaattcatgattttattttcttatgatctttcaatcttcaa 45867601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 14951909 - 14951854
Alignment:
Q  236 agattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||| |||||||||| |||||||||||||||| | |||||||||||    
T  14951909 agattttcaagcttaaaattcatgtatttattttcttatggcctctcaatcttcaa 14951854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 1270212 - 1270265
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  1270212 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 1270265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 1650606 - 1650659
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  1650606 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 1650659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 10192188 - 10192241
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  10192188 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 10192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 11724828 - 11724775
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  11724828 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 11724775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 29154274 - 29154237
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatg 275  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29154274 attttcaagcttcaaattcatggttttattttcttatg 29154237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 2415536 - 2415499
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatg 275  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  2415536 attttcaagcttaaaattcatatttttattttcttatg 2415499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 9027236 - 9027183
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||||||  |||||||| ||||||||||||||||  |||||||||||||    
T  9027236 atttttaagcttagaattcatgattttattttcttatggtctttcaatcttcaa 9027183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 9912015 - 9912068
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  9912015 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 9912068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 11723917 - 11723864
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||| | |||| |||||||    
T  11723917 atttttaagcttaaaattcatgattttattttcttatggttcttcagtcttcaa 11723864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 17549172 - 17549225
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  17549172 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 17549225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 23926494 - 23926547
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||| ||||||  |||||||||||||    
T  23926494 atttttaagcttaaaattcatgattttatttttttatggtctttcaatcttcaa 23926547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 29421796 - 29421849
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||| ||||||||  |||||||||||||    
T  29421796 atttttaagcttaaaattcatgattttattctcttatggtctttcaatcttcaa 29421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 31556850 - 31556903
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||| |||||||  |||||||||||||    
T  31556850 atttttaagcttaaaattcatgattttatttacttatggtctttcaatcttcaa 31556903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 33274500 - 33274553
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  33274500 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 33274553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 42950622 - 42950675
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  42950622 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 42950675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 18508665 - 18508629
Alignment:
Q  239 ttttcaagcttcaaattcatgtttttattttcttatg 275  Q
    ||||||||||||||||||||  |||||||||||||||    
T  18508665 ttttcaagcttcaaattcattgttttattttcttatg 18508629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 26499609 - 26499569
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  26499609 aaattcatgattttattttcttatggtctttcaatcttcaa 26499569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 12875768 - 12875822
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||    
T  12875768 gattttcaagcttcaaatttatggttttattttctgatggcctttcaatcttcaa 12875822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 14871945 - 14871892
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  14871945 atttttaagcttaaaattcatgattttattttcttatggtttttcaatcttcaa 14871892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 35160639 - 35160600
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggc 277  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  35160639 attttcaagcttcaaattcatgattttattttcttatggc 35160600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 16737014 - 16736961
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  16737014 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 16736961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 18707481 - 18707428
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| |||||||||||||||| ||||||||||||||    
T  18707481 atttttaagtttaaaattcatgattttattttcttatggtttttcaatcttcaa 18707428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 40952279 - 40952226
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  40952279 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 40952226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 1098996 - 1099048
Alignment:
Q  239 ttttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  1098996 tttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 1099048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 3168294 - 3168251
Alignment:
Q  248 ttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||| ||||||||||||||||  |||||||||||||    
T  3168294 ttcaaattcatgattttattttcttatggtctttcaatcttcaa 3168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 33429738 - 33429691
Alignment:
Q  244 aagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  33429738 aagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 33429691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 34159280 - 34159330
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatctt 288  Q
    ||||| ||||||||||||||||  |||||||||||||||| | ||||||||    
T  34159280 atttttaagcttcaaattcatgactttattttcttatggcctctcaatctt 34159330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 2426440 - 2426387
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  2426440 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 2426387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 2960997 - 2961050
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||| ||||||||    
T  2960997 atttttaagcttaaaattcatgattttattttcttatggtctttcgatcttcaa 2961050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 2969465 - 2969518
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||| ||||||||    
T  2969465 atttttaagcttaaaattcatgattttattttcttatggtctttcgatcttcaa 2969518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 3279291 - 3279344
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  3279291 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 3279344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 3974316 - 3974369
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| || ||| ||||||||| ||||||||||||||||  |||||||||||||    
T  3974316 atttttaaacttaaaattcatgattttattttcttatggtctttcaatcttcaa 3974369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 13697421 - 13697474
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||| ||||||  |||||||||||||    
T  13697421 atttttaagcttaaaattcatgattttatttttttatggtctttcaatcttcaa 13697474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 24858614 - 24858561
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  24858614 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 24858561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 31486060 - 31486113
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||| |  |||||||||||||    
T  31486060 atttttaagcttaaaattcatgattttattttcttatcgtctttcaatcttcaa 31486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 37092282 - 37092335
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  37092282 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 37092335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 7610366 - 7610402
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttat 274  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  7610366 attttcaagcttaaaattcatgattttattttcttat 7610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 32772107 - 32772147
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  32772107 aaattcatgattttattttcttatggtctttcaatcttcaa 32772147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 23963058 - 23963005
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||| ||||||||||||| ||||||||||||||| | |||||||||||||    
T  23963058 attttcaaacttcaaattcatggttttattttcttatgacatttcaatcttcaa 23963005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 49498528 - 49498581
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||    
T  49498528 attttcaaacttcaaattcatggttttattttctcatggcatttcaatcttcaa 49498581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 54036967 - 54037020
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||||||||||||| ||||||||||||||||  |||||||||||||    
T  54036967 atttttaagcttcaaattcatgattttattttcttatggtctttcaatcttcaa 54037020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 53563335 - 53563281
Alignment:
Q  237 gattttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||||| ||||||||||||||||||||||| | | | |||||||||||    
T  53563335 gattttcaagcttaaaattcatgtttttattttcttaggacctctcaatcttcaa 53563281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 5618223 - 5618276
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||| ||||||| |||||||||||||| ||||| || |||||||    
T  5618223 attttcaagcttcatattcatgattttattttcttatagctttccagtcttcaa 5618276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 26886713 - 26886766
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  26886713 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 26886766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 41935704 - 41935651
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  41935704 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 41935651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 18635946 - 18635996
Alignment:
Q  241 ttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||| ||||| ||||||||||||||| | |||||||||||||    
T  18635946 ttcaagctttaaactcatgcttttattttcttatgacctttcaatcttcaa 18635996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 5747978 - 5748031
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  5747978 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 5748031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 10993836 - 10993783
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||| |  |||||||||||||    
T  10993836 atttttaagcttaaaattcatgattttattttcttatagtctttcaatcttcaa 10993783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 20984017 - 20984070
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  20984017 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 20984070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 23572704 - 23572757
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||  ||||||||| ||||||||||||||||  |||||||||||||    
T  23572704 atttttaagctgaaaattcatgattttattttcttatggtctttcaatcttcaa 23572757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 26948195 - 26948142
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  26948195 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 26948142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 30637157 - 30637104
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||||| |||||||||| |||||  || ||||||| |||||||||||||    
T  30637157 attttcaagctccaaattcatggttttaactttttatggcatttcaatcttcaa 30637104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 46648172 - 46648225
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  46648172 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 46648225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 50512698 - 50512661
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatg 275  Q
    |||||||||||||||||||||  |||||||||||||||    
T  50512698 attttcaagcttcaaattcatagttttattttcttatg 50512661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 52654035 - 52654088
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  52654035 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 52654088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 32188030 - 32188070
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  32188030 aaattcatgattttattttcttatggtctttcaatcttcaa 32188070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 52537995 - 52538035
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  52537995 aaattcatgattttattttcttatggtttttcagtcttcaa 52538035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 54997068 - 54997032
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttat 274  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  54997068 attttcaagcttcaaatttatggttttattttcttat 54997032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 4573 - 4520
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  4573 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 4520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 41490 - 41437
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  41490 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 41437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 9546622 - 9546569
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  9546622 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 9546569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 11361892 - 11361945
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  11361892 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 11361945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 13853353 - 13853300
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  13853353 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 13853300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 17853854 - 17853801
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  |||||||||||||    
T  17853854 atttttaagcttaaaattcatgattttattttcttatggtctttcaatcttcaa 17853801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 4137423 - 4137380
Alignment:
Q  248 ttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    |||||||||||| ||||||||||||||| | |||||||||||||    
T  4137423 ttcaaattcatggttttattttcttatgacatttcaatcttcaa 4137380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 1925219 - 1925272
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  1925219 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 1925272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 2316592 - 2316645
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  2316592 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 2316645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 3012124 - 3012071
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| |||||||||||||||| |||||||| |||||    
T  3012124 atttttaagtttaaaattcatgattttattttcttatggtttttcaattttcaa 3012071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 9220206 - 9220259
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  9220206 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 9220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 21926275 - 21926222
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| || ||| ||||||||| ||||||||||||||||  |||||||||||||    
T  21926275 atttttaaacttaaaattcatgattttattttcttatggtctttcaatcttcaa 21926222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 22568866 - 22568919
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||   ||||||||||||    
T  22568866 atttttaagcttaaaattcatgattttattttcttatggtccttcaatcttcaa 22568919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 28852291 - 28852344
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| ||||||||||||||||  ||||| |||||||    
T  28852291 atttttaagcttaaaattcatgattttattttcttatggtctttcagtcttcaa 28852344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 25026189 - 25026133
Alignment:
Q  236 agattttcaagcttcaaattcatgttttta-ttttcttatggcttttcaatcttcaa 291  Q
    |||||||||||||| ||||||||||||| | |||| ||||||| | |||||||||||    
T  25026189 agattttcaagcttaaaattcatgttttaattttttttatggcctctcaatcttcaa 25026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 25121695 - 25121655
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  25121695 aaattcatgattttattttcttatggtctttcaatcttcaa 25121655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 107960 - 108010
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttc 289  Q
    ||||| |||||| ||||||||| |||||||||||||||| ||||||||||||    
T  107960 atttttaagctt-aaattcatgattttattttcttatggtttttcaatcttc 108010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 10130 - 10077
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| ||| || ||||||||| ||||||||||||||||  |||||||||||||    
T  10130 atttttaagtttaaaattcatgattttattttcttatggtctttcaatcttcaa 10077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 258858 - 258911
Alignment:
Q  238 attttcaagcttcaaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||| |||||| ||||||||| |||||||||||||||| | |||| |||||||    
T  258858 atttttaagcttaaaattcatgattttattttcttatggttcttcagtcttcaa 258911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 8504 - 8544
Alignment:
Q  251 aaattcatgtttttattttcttatggcttttcaatcttcaa 291  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  8504 aaattcatgattttattttcttatggtctttcaatcttcaa 8544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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