View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_63 (Length: 309)

Name: NF3929_low_63
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_63
NF3929_low_63
[»] chr2 (1 HSPs)
chr2 (1-294)||(43045362-43045655)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 43045362 - 43045655
Alignment:
Q  1 cggtaaaaatgacatttcttctattattttaaaggcccttcataattgtctgaaagatggttgggggtgtcagtaaccgtaatgacattatacacaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43045362 cggtaaaaatgacatttcttctattattttaaaggcccttcataattgtctgaaagatggttgggggtgtcagtaaccgtaatgacattatacacaaaag 43045461  T
Q  101 tggcagttttttagaatttaaggcaatttgtaactgaatttaaaacaatataannnnnnncctatattcttaatcaccttaactcccacgccatctctaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||    
T  43045462 tggcagttttgtagaatttaaggcaatttgtaactgaatttaaaacaatataatttttttcctatattcttaatctccttaactcccacgccatctctaa 43045561  T
Q  201 cttgtctatgtgatgattttgagaacggcagaattttaatattctccgagggagttcattaatgataacagggcttgtattcatatctttcgat 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43045562 cttgtctatgtgatgattttgagaacggcagaattttagtattctccgagggagttcattaatgataacagggcttgtattcatatctttcgat 43045655  T

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