View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_69 (Length: 297)
Name: NF3929_low_69
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_69 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 36657239 - 36656944
Alignment:
| Q |
1 |
taaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcaggatgaacatttt |
100 |
Q |
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| T |
36657239 |
taaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcaggatgaacatttt |
36657140 |
T |
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| Q |
101 |
atgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataacaatggattcat |
200 |
Q |
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| T |
36657139 |
atgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataacaatggattcat |
36657040 |
T |
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| Q |
201 |
attttctatttcatcaatgcatgtgttattagtgaaaaaatgacactccaaaaggtctgtagtaccaaatttgcttgtatcagcattcgtttttcat |
297 |
Q |
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| T |
36657039 |
attttctatttcatcaatgcatgtgttattagtga-aaaatgacactccaaaaggtctgtagtaccaaatttgcttgtatcagcattcgtttttcat |
36656944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 34076179 - 34076477
Alignment:
| Q |
1 |
taaatttgtatgaaatttaactactgcatttagattaaagcaatctgtcttctagttttgtatttcatgtgacaggccaaaatagcaggatgaacatttt |
100 |
Q |
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||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
34076179 |
taaatttgtatgaaatttaactattgcatgtagattagagcaatctgtcttctagttttgtattccaagtgacaggccaaaatagcaggatgaacatttt |
34076278 |
T |
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| Q |
101 |
atgtggtttagttttgtaagtgttgctgcaacgtttgaatgtggaagtttaggtacagtttcattagtttcatgtaggggatgtataacaatggattcat |
200 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |
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| T |
34076279 |
ctgtggtttagttttgtaagtgttgcttcaacttttgaatgtggaagtttaggtacagtctcaatagtttcatgtagggaatgtataacaatggattcat |
34076378 |
T |
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| Q |
201 |
attttctatttcatcaatgcatgtgttattagtgaaaaaatgacactccaaaaggtctgtagtaccaaatttgcttgt---atcagcattcgtttttcat |
297 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| |
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| T |
34076379 |
attttctattacatcaatgcatgtgttattagtg-aaaaatgacactccaaaaggtctgcagtaccaaatttgcttgtagcatcagcattcatttttcat |
34076477 |
T |
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