View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_70 (Length: 296)
Name: NF3929_low_70
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 9446150 - 9445952
Alignment:
| Q |
75 |
ttgtcagtttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaa |
174 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9446150 |
ttgtcagtttcatctataaccgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaag----gcaacaaa |
9446055 |
T |
|
| Q |
175 |
ctttcttcaattgcaaaggttgcacaacctaaaacaaaaaattagaaacatgttcacttctcaagagtggtcagacttaaaaggtgagtgatgaagccaa |
274 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
9446054 |
ctttcttcaattgcaaaggtttcacaacctaaaacaaaaaattagaaccatgttcacttctcaagagtggtcggactt-aaaggtgagtgatgaagccaa |
9445956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 3071646 - 3071444
Alignment:
| Q |
75 |
ttgtcagtttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaa |
174 |
Q |
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|||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3071646 |
ttgttagtttcatctataaccattacttggttttgaatctgttgagggagaaagctgaaatggagttgattagacatggagtcacaaggtttgcaacaaa |
3071547 |
T |
|
| Q |
175 |
ctttcttcaattgcaaaggttgcacaacctaaaacaaaaaattagaaacatgttcacttctcaagagtggtcagacttaaaaggtgagtgatgaagccaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
3071546 |
ctttcttcaattgcaaaggttgcacaacctaaaacaaaaaattagaaccattttcacttctcaagagtggtcagactt-aaaggtgggtgatgaagccaa |
3071448 |
T |
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| Q |
275 |
gggt |
278 |
Q |
| |
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|||| |
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| T |
3071447 |
gggt |
3071444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 9446468 - 9446414
Alignment:
| Q |
11 |
gatgaaggaaaaagcttcggaagattaatgtgtaaaacgaatggtgtcatggtgc |
65 |
Q |
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| T |
9446468 |
gatgaaggaaaaagcttcagaagattaatgtgtaaaacgaatggtgtcatggtgc |
9446414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 24194010 - 24193812
Alignment:
| Q |
75 |
ttgtcagtttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaa |
174 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
24194010 |
ttgtcggtttcatctataaccattctttggttttgaatttgttgagggagaaagctgaaagtgagttgattagacattgagtcacaaggtttgcaacaaa |
24193911 |
T |
|
| Q |
175 |
ctttcttcaattgcaaaggttgcacaacctaaaacaaaaaattagaaacatgttcacttctcaagagtggtcagacttaaaaggtgagtgatgaagccaa |
274 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| || || |||||| ||||| |||||||| |
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| T |
24193910 |
ctttcttcaattgcaaatgttgcacaacctaaaacaaaaaattataaccatgttcacttctcaagagtggtcgga-tttaaaggtcagtgacgaagccaa |
24193812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 24194507 - 24194709
Alignment:
| Q |
75 |
ttgtcagtttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaa |
174 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
24194507 |
ttgtcggtttcatctataaccattctttggttttgaatttgttgagggagaaagctgaaagtgagttgattagacattgagtcacaaggtttgcaacaaa |
24194606 |
T |
|
| Q |
175 |
ctttcttcaattgcaaaggttgcacaacctaaaacaaaaaattagaaacatgttcacttctcaagagtggtcagacttaaaaggtgagtgatgaagccaa |
274 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| || || |||||||||||| |||| ||| |
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| T |
24194607 |
ctttcttcaattgcaaatgttgcacaacctaaaacaaaaatttagaaccatgttcacttctcaacagtggtc-gaatttaaaggtgagtgacgaagtcaa |
24194705 |
T |
|
| Q |
275 |
gggt |
278 |
Q |
| |
|
|||| |
|
|
| T |
24194706 |
gggt |
24194709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 2947078 - 2947273
Alignment:
| Q |
83 |
ttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaactttcttc |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2947078 |
ttcatctataaccattctttggttttgaatttattgtgggagaaagctgaaatggagttgattagacatggagtcacaaggtttgccacaaactttcttc |
2947177 |
T |
|
| Q |
183 |
aattgcaaaggttgcacaacctaaaacaaaaaattagaaaca-tgttcacttctcaagagtggtcagacttaaaaggtgagtgatgaagccaagggt |
278 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| | ||||| ||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
2947178 |
aattgaaaaggttgtacaacctaaaacaaaaaaattaaaacattgttcacttttcaagaatggtcggactt-aaaggtgagtgatgaagccaagggt |
2947273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 39164272 - 39164132
Alignment:
| Q |
81 |
gtttcatctataactgttctttggttttgaacttgttgagggagaaagctgaaatggagttgattagacatggagtcacaagttttgcaacaaactttct |
180 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||||| ||| || ||||||||||||||||||| |||||| ||||| |||||||| |
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| T |
39164272 |
gtttcatctataaccattcttgggttttgaatttgttgagggagaaaactggaagcgagttgattagacatggag-cacaaggtttgccacaaactt--- |
39164177 |
T |
|
| Q |
181 |
tcaattgcaaaggttgcacaacctaaaacaaaaaattagaaacatgttcacttctca |
237 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
39164176 |
------------gttgcacaacctaaaataaaaaattagaaccatgttcacttctca |
39164132 |
T |
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