View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3929_low_71 (Length: 294)
Name: NF3929_low_71
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_71 |
 | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 54423744 - 54423485
Alignment:
| Q |
15 |
tcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54423744 |
tcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaa |
54423645 |
T |
|
| Q |
115 |
gctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54423644 |
gctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgtgcatcacctccgttgaatatcacgtcattttcaacggcgaccgca |
54423545 |
T |
|
| Q |
215 |
ttggccctaacactcccgaacgaggtctccgtcaaggctccccactctcaccatatctat |
274 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
54423544 |
ttggccctatcactcccgaacgaggtctccatcaaggctgcccactctcaccatatctat |
54423485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 20127374 - 20127624
Alignment:
| Q |
16 |
catcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| || |||||||| |||||||||||||| |||||||||| |||| | ||||||||| |
|
|
| T |
20127374 |
catcatatgcgctgcaaaacaaaagggaaaataggcgaggtggcactaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaat |
20127473 |
T |
|
| Q |
116 |
ctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcat |
215 |
Q |
| |
|
| ||| | |||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
20127474 |
ccattctccttaaaatgggtttcagttcacaatggacctcctggatgatgatgtgcatcacctccgttgaataccacgtcatttttaatggtgaccgcat |
20127573 |
T |
|
| Q |
216 |
tggccctaacactcccgaacgaggtctccgtcaaggctccccactctcacc |
266 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||| ||| |||||||| |
|
|
| T |
20127574 |
tggccctatcactcccgaacgaggtcttcaccaaggctgccccctctcacc |
20127624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 27645698 - 27645442
Alignment:
| Q |
16 |
catcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaag |
115 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| || || ||||| || |||||||| | |||| |||||| |||| |
|
|
| T |
27645698 |
catcatatgcgctgcaaaaccaaaggtaaaattggtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaag |
27645599 |
T |
|
| Q |
116 |
ctattttatttaaaatggggttcagttcacagtggacttcctggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcat |
215 |
Q |
| |
|
||||| | || ||||| || || | | |||| || |||||||||||| ||||||| || || |||||||| || || ||||| ||||| ||||| |
|
|
| T |
27645598 |
ctattcttgacaagatgggtttttgtactcggtgggtatcatggatgatgatgtgcatcacttctgtggaatatcatgttatctttaatggcgatcgcat |
27645499 |
T |
|
| Q |
216 |
tggccctaacactcccgaacgaggtctccgtcaaggctccccactctcaccatatct |
272 |
Q |
| |
|
||| |||| ||| || ||||| || ||||| ||||||| ||| |||||||| ||||| |
|
|
| T |
27645498 |
tggacctatcacccctgaacgtggactccggcaaggctgccctctctcaccttatct |
27645442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
| Q |
19 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
95 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
|
|
| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
12461045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 13190520 - 13190424
Alignment:
| Q |
157 |
tggatgatgatgcgcatcacctccgttgaatatcacgtcatttttaacggcgaccgcattggccctaacactcccgaacgaggtctccgtcaaggct |
253 |
Q |
| |
|
|||||| ||||| |||||| || || ||||||||||| ||||| ||||| ||||| |||| ||||| || || ||| |||||||||| ||||||| |
|
|
| T |
13190520 |
tggatgttgatgtgcatcatgtctgtcgaatatcacgttattttcaacggtgaccgaattgaccctattaccccggaaagaggtctccgacaaggct |
13190424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
| Q |
19 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
95 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || ||||| |
|
|
| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt |
16861059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
| Q |
19 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
95 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
|
|
| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
1937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 11625204 - 11625279
Alignment:
| Q |
20 |
atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
95 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| || ||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
11625204 |
atatgcgctgcaagaataaaggaaaaaaaggtgatgtagctctaaaacttgacatttcgaaggcttttgatagtgt |
11625279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 51142295 - 51142253
Alignment:
| Q |
155 |
cctggatgatgatgcgcatcacctccgttgaatatcacgtcat |
197 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
51142295 |
cctggatgatgatgtgcatcacctcagttgaatatcatgtcat |
51142253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University