View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_75 (Length: 280)
Name: NF3929_low_75
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_75 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 27626482 - 27626203
Alignment:
| Q |
1 |
aagtacctagcaacaccaagaacaccagcagccatagtaagagtagaaatccgatcaacggctttaggatcaacactataagctttctgaaaactacctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27626482 |
aagtacctagcaacaccaagaacaccagcagccatagtaagagtagaaatccgatcaacagctttaggatcaacactataagctttctgaaaactacctt |
27626383 |
T |
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| Q |
101 |
cacccttatcacctgaatcaacnnnnnnngcaccattcgccattacatcgccttcagatttccaattccacgaagtccattcgctgtcaccagaatccaa |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27626382 |
cacccttatcacctgaatcaacaaaaaaagcaccattcgccataacatcgccttcagatttccaattccacgaagtccattcgctgtcaccagaatccaa |
27626283 |
T |
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| Q |
201 |
cctcttcgtcacttgcttcgcatcaacatcctcaggagccgtataccggttaccttgcatcagagataaagttagttaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27626282 |
cctcttcgtcacttgcttcgcatcaacatcctcaggagccgtataccggttaccttgaatcagagataaagttagttaat |
27626203 |
T |
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