View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_76 (Length: 277)
Name: NF3929_low_76
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_76 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 19715062 - 19715231
Alignment:
| Q |
8 |
gacaagtaggaaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacgacaaaatagattggtagctgcataaaggacataag |
107 |
Q |
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| T |
19715062 |
gacaagtaggaaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacaacaaaatagattggtagctgcataaaggacagaag |
19715161 |
T |
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| Q |
108 |
catggttgtcagcattatgatgtttataattctatcaaaatataaaaaagcatcaaaaggttcggttaag |
177 |
Q |
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| T |
19715162 |
aatggttgttagcattatgatgtttataattctatcaaaatataaaaaagcatcaaaaggttcggttaag |
19715231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 12708616 - 12708447
Alignment:
| Q |
8 |
gacaagtaggaaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacgacaaaatagattggtagctgcataaaggacataag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12708616 |
gacaagtaggaaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacgacaaaatagattggtagctgcataaaggacagaag |
12708517 |
T |
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| Q |
108 |
catggttgtcagcattatgatgtttataattctatcaaaatataaaaaagcatcaaaaggttcggttaag |
177 |
Q |
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| T |
12708516 |
catggttgtcagcattgtgatatttacaattctatcaaaatataaaaaagcatcaaaaggtttggttaag |
12708447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 12714525 - 12714381
Alignment:
| Q |
18 |
aaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacgacaaaatagattggtagctgcataaaggacataagcatggttgtc |
117 |
Q |
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| T |
12714525 |
aaaattcatcagaccaactccaaccattaatagaccgtaacatcctaaagacacgacaaaatagattggtag---------------aagcatggtggtc |
12714441 |
T |
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| Q |
118 |
agcattatgatgtttataattctatcaaaatataaaaaagcatcaaaaggttcggttaag |
177 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12714440 |
agcattatgatatttataattctatcaaaatataaaaaagcatcaaaaggtttggttaag |
12714381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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