View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_77 (Length: 263)
Name: NF3929_low_77
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_77 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 713685 - 713929
Alignment:
| Q |
1 |
caaaagaatacaacaattagaatatttctcaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatcataaaattaagggt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713685 |
caaaagaatacaacaattagaatatttcccaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatcataaaattaagggt |
713784 |
T |
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| Q |
101 |
caataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcattctatttaggaatgattgatgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
713785 |
caataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcatgctatttaggaatgattgatgat |
713884 |
T |
|
| Q |
201 |
ttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaa |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713885 |
ttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaa |
713929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 21368658 - 21368540
Alignment:
| Q |
64 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
163 |
Q |
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||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
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| T |
21368658 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
21368560 |
T |
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| Q |
164 |
accggtgcttgcattctatt |
183 |
Q |
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| T |
21368559 |
aacagtgcttgcatgctatt |
21368540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3763530 - 3763778
Alignment:
| Q |
1 |
caaaagaatacaacaattagaatatttctcaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatc----ataaaattaa |
96 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3763530 |
caaaagaatacaacaattagaatatttcccaaaaatttacattttcttttgaaacttgtaaatatagtttaacatgcagaatcatccatcataaaattaa |
3763629 |
T |
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| Q |
97 |
gggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcattctatttaggaatgattga |
196 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
3763630 |
gggtcaaaaacataaaatggaaatctatttaaacaccaatttaaaaaagaaaactaacaaaatttctaccggtgcttgcatgctatttaagaatgattga |
3763729 |
T |
|
| Q |
197 |
tgatttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaa |
245 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3763730 |
tgacttacaacaccaaaaatccaaaaaggtacataaaagcatgtagaaa |
3763778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 13183 - 13065
Alignment:
| Q |
64 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
163 |
Q |
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||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
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| T |
13183 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
13085 |
T |
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| Q |
164 |
accggtgcttgcattctatt |
183 |
Q |
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| T |
13084 |
aacagtgcttgcatgctatt |
13065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 23899911 - 23900029
Alignment:
| Q |
64 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
163 |
Q |
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||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
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| T |
23899911 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
23900009 |
T |
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| Q |
164 |
accggtgcttgcattctatt |
183 |
Q |
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| | |||||||||| ||||| |
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| T |
23900010 |
aacagtgcttgcatgctatt |
23900029 |
T |
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