View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_8 (Length: 751)
Name: NF3929_low_8
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 179 - 741
Target Start/End: Complemental strand, 49270878 - 49270316
Alignment:
| Q |
179 |
tttttcattctcacttggctcatgttcatttccaatttaatggaagagatgaaatcattcaatttcttttacatcatcatgatatgataaaggctacact |
278 |
Q |
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| T |
49270878 |
tttttcattctcacttggctcatgttcatttccaatttaattgaagagatgaaatcattcaatttcttttacatcatcatgatatgataaaggatacact |
49270779 |
T |
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| Q |
279 |
aacactgcagagccttaccaaaaattgaactgagaagnnnnnnnntatcatctattttataactatttctccgcgtgaaaacttattcccccttagtctt |
378 |
Q |
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| T |
49270778 |
aacactgcagagccttaccaaaaattgaactgagaagaaaaaaaatatcatctattttataactatttctccgcgtgaaaactttttcccccttagtctt |
49270679 |
T |
|
| Q |
379 |
tatagtatctgagatttgatatttctctctaatcacatcaagctataagctttagagatgttaactaaacaagctgcagctttgagaaacctactccgtt |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49270678 |
tatagtatctgagatttgatatttctctctaatcacatcaagctataagctttagagatgttaactaaacaagctgcagctttgagaaacctactccatt |
49270579 |
T |
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| Q |
479 |
tgttcaaattgatctatcttcttctactgcaaaacttcctgtcttccttgaaatatcctttcccgtgccttgattgcctgcaatcagacattccagaaat |
578 |
Q |
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| T |
49270578 |
tgttcaaattgatctatcttcttctactgcaaaacttcctgtcttccttgaaatatcctttcccgtgccttgattgcctgcaatcagacattccagaaat |
49270479 |
T |
|
| Q |
579 |
tattatatttcaataaacagtacatgttcaaaactgttacagaatcataataagatagcatggcctaagatgttagttctctttgagtatgaacataatt |
678 |
Q |
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| T |
49270478 |
tattatatttcaataaacagtacatgttcaaaactgttacagaatcataataagatagcaaggcctaagatgttagttctgtttgagtatgaacataatt |
49270379 |
T |
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| Q |
679 |
atcttctcaagtttaacataataatgtgaaaatatttagcttgacaggatttcttgatctgtg |
741 |
Q |
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| T |
49270378 |
atcttctcaagtttaacataataatgtgaaaatatttagcttgacaggatttcttgatctgtg |
49270316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 525 - 739
Target Start/End: Complemental strand, 49257551 - 49257337
Alignment:
| Q |
525 |
cttgaaatatcctttcccgtgccttgattgcctgcaatca--gacattccagaaattattatatttcaataaacagtacatgttcaaaactgttacagaa |
622 |
Q |
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| T |
49257551 |
cttgaaatatcctttcccgtgccttaattgcctgcaatcatagacactcaagaaatgagtatattttaatgaatggtatatgttcaaaactcttgcagaa |
49257452 |
T |
|
| Q |
623 |
tcataataagatagcatggcctaagatgttagttctctttgagtatgaacataattatcttctcaagtttaacataataatgtgaaaatatttagcttga |
722 |
Q |
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|| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||| |
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| T |
49257451 |
tcttaataagatagcatggcctaagatgctagttctc--tgagtatgaacattgatatcttctctagtttaacatatttccttgaaaatatttagcttga |
49257354 |
T |
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| Q |
723 |
caggatttcttgatctg |
739 |
Q |
| |
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||| ||||||||||||| |
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| T |
49257353 |
cagaatttcttgatctg |
49257337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 49272948 - 49272819
Alignment:
| Q |
179 |
tttttcattctcacttggctcatgttcatttccaatttaa-tggaagagatgaaatcattcaatttcttttacatcatcatgatatgataaaggctacac |
277 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||| ||| || | ||| ||||||| |||||||||||||||||||||||||| |||||||||| | ||||| |
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| T |
49272948 |
ttttacattctcacttggctcaaattcatctccgattgaaattgaaaagatgaactcattcaatttcttttacatcatcataatatgataaaagttacac |
49272849 |
T |
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| Q |
278 |
taacactgcagagccttaccaaaaattgaac |
308 |
Q |
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||||||||||||| |||| |||||||||||| |
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| T |
49272848 |
taacactgcagag-cttaacaaaaattgaac |
49272819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 49271033 - 49270976
Alignment:
| Q |
24 |
cccctcaataaagattataattgtattcatcatccaacaaagaaaatcacagtagagg |
81 |
Q |
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| T |
49271033 |
cccctcaataaagattataattgtattcatcatccaacaaagaaaatcacagtagagg |
49270976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 454
Target Start/End: Complemental strand, 49272788 - 49272703
Alignment:
| Q |
369 |
ccttagtctttatagtatctgagatttgatatttctctctaatcacatcaagctataagctttagagatgttaactaaacaagctg |
454 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||| | || |||| |||||||| | |||||| |||||||||||||| |
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| T |
49272788 |
ccttagtccttatagtatctgagatttgatattctgctctaataaaattaagccataagcttcaaagatgtcaactaaacaagctg |
49272703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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