View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_82 (Length: 255)

Name: NF3929_low_82
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_82
NF3929_low_82
[»] scaffold1370 (1 HSPs)
scaffold1370 (24-187)||(817-980)
[»] chr8 (4 HSPs)
chr8 (24-187)||(37551604-37551765)
chr8 (78-187)||(7088876-7088985)
chr8 (78-187)||(39321853-39321962)
chr8 (99-145)||(32318068-32318114)
[»] scaffold0285 (1 HSPs)
scaffold0285 (24-162)||(16830-16968)
[»] chr4 (5 HSPs)
chr4 (78-186)||(49574056-49574163)
chr4 (126-187)||(50303374-50303433)
chr4 (77-164)||(22405770-22405859)
chr4 (101-162)||(50182462-50182523)
chr4 (126-167)||(50302457-50302498)
[»] chr7 (1 HSPs)
chr7 (78-165)||(29065385-29065473)
[»] chr1 (6 HSPs)
chr1 (89-162)||(2071440-2071514)
chr1 (127-187)||(22914697-22914757)
chr1 (104-162)||(15248877-15248935)
chr1 (133-187)||(22913806-22913860)
chr1 (126-187)||(13505299-13505360)
chr1 (126-187)||(19139620-19139681)
[»] chr3 (5 HSPs)
chr3 (117-187)||(35653101-35653167)
chr3 (117-187)||(35653830-35653900)
chr3 (124-187)||(8652012-8652076)
chr3 (89-162)||(48058927-48059001)
chr3 (77-162)||(36502342-36502427)
[»] chr2 (2 HSPs)
chr2 (78-187)||(11682042-11682151)
chr2 (99-187)||(29647404-29647490)
[»] chr5 (7 HSPs)
chr5 (77-187)||(40268983-40269093)
chr5 (126-187)||(24871639-24871700)
chr5 (126-167)||(25746785-25746826)
chr5 (89-187)||(33574108-33574208)
chr5 (118-160)||(18861899-18861941)
chr5 (99-132)||(18862677-18862710)
chr5 (126-187)||(25745846-25745907)
[»] chr6 (2 HSPs)
chr6 (126-165)||(7588197-7588236)
chr6 (125-187)||(20378957-20379018)
[»] scaffold0006 (1 HSPs)
scaffold0006 (126-187)||(138534-138595)


Alignment Details
Target: scaffold1370 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 817 - 980
Alignment:
Q  24 gagagagaagaggcatggatgaaggtgctgagaaataattaggttccaattactaaaattagatctcatggtaaggattgatccaaaggctatgatttaa 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  817 gagagagaagaggcatgtatgaaggtgctgagaaataattaggttgcaattactaaaattagatctcatggtaaggattaacccaaaggctatgatttaa 916  T
Q  124 ccctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||  | ||||||||||||||    
T  917 ccctctcatctctcattttaaaattcctctcacttgatacaccctctatatatatatatatata 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 37551604 - 37551765
Alignment:
Q  24 gagagagaagaggcatggatgaaggtgctgagaaataattaggttccaattactaaaattagatctcatggtaaggattgatccaaaggctatgatttaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37551604 gagagagaagaggcatggatgaaggtgctgagaaataattaggctgcaattactaaaattagatctcatggtaaggattgatccaaaggctatgatttaa 37551703  T
Q  124 ccctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||  |||||||||||||||| |||||||||||||| |||   | ||||||||||||||    
T  37551704 ccctctca--tctcattttaaaactcctctcacttgatacaccctatatatatatatatatata 37551765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 7088985 - 7088876
Alignment:
Q  78 aaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctata 177  Q
    ||||||| || |||| |||| ||||||||||| |||| |||||||  ||||||| |||||||  ||||||   |||||||||||||| |||   | ||||    
T  7088985 aaaattaaatatcatagtaatgattgatccaagggctgtgatttactcctctcacctctcataataaaaccactctcacttgatacaccctatatatata 7088886  T
Q  178 tatatatata 187  Q
    ||||||||||    
T  7088885 tatatatata 7088876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 39321853 - 39321962
Alignment:
Q  78 aaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctata 177  Q
    ||||||| || |||| |||| ||||||||||| |||| |||||||  ||||||| |||||||  |||||    |||||||||||||| ||||  | ||||    
T  39321853 aaaattaaatatcatagtaatgattgatccaagggctgtgatttactcctctcacctctcataataaaagcactctcacttgatacaccctctatatata 39321952  T
Q  178 tatatatata 187  Q
    ||||||||||    
T  39321953 tatatatata 39321962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 32318114 - 32318068
Alignment:
Q  99 gattgatccaaaggctatgatttaaccctctcatctctcattttaaa 145  Q
    ||||||||||| || | | ||||||||||||||||||||||||||||    
T  32318114 gattgatccaagggttgtaatttaaccctctcatctctcattttaaa 32318068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 16968 - 16830
Alignment:
Q  24 gagagagaagaggcatggatgaaggtgctgagaaataattaggttccaattactaaaattagatctcatggtaaggattgatccaaaggctatgatttaa 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968 gagagagaagaggcatgtatgaaggtgctgagaaataattaggctgcaattactaaaattagatctcatggtaaggattgatccaaaggctatgatttaa 16869  T
Q  124 ccctctcatctctcattttaaaactcatctcacttgata 162  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  16868 ccctctcatctctcattttgaaactcctctcacttgata 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 49574163 - 49574056
Alignment:
Q  78 aaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaa-aactcatctcacttgatacatcctccctctat 176  Q
    ||||||| || ||||| ||| |||||||| || || | |||||||||||||||| |||||||||||| ||||| |||||||||||||||  ||||| |||    
T  49574163 aaaattatatatcatgataatgattgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgatacat--tccctatat 49574066  T
Q  177 atatatatat 186  Q
    ||||||||||    
T  49574065 atatatatat 49574056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 50303374 - 50303433
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    |||||||||||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||    
T  50303374 ctctcatctctcattttaaaactcctctcatttgatacatc--ccctatatatatatatata 50303433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 22405859 - 22405770
Alignment:
Q  77 taaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcatt-ttaaaa-ctcatctcacttgataca 164  Q
    |||||||| || |||||| ||||||| |||||| ||  | |||||||||||||||||||| ||| ||||||  || ||||||||||||||    
T  22405859 taaaattaaatatcatggaaaggatttatccaatggtcaagatttaaccctctcatctcttattattaaaatgtcctctcacttgataca 22405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 50182523 - 50182462
Alignment:
Q  101 ttgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgata 162  Q
    |||||||||||| ||| |||||  |||||||||||||||||| ||| |  ||||||||||||    
T  50182523 ttgatccaaaggttataatttattcctctcatctctcattttgaaagtgctctcacttgata 50182462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 50302498 - 50302457
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcc 167  Q
    |||||||||||||||||||||||| ||||| |||| ||||||    
T  50302498 ctctcatctctcattttaaaactcctctcatttgaaacatcc 50302457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 29065385 - 29065473
Alignment:
Q  78 aaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaa-aactcatctcacttgatacat 165  Q
    ||||||| || ||||| ||| ||||||||||| || | ||||||||||||||||  ||||||||||| ||||| |||||||||||||||    
T  29065385 aaaattaaatatcatgataatgattgatccaagggttgtgatttaaccctctcacttctcattttaagaactcctctcacttgatacat 29065473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 2071440 - 2071514
Alignment:
Q  89 tcatggtaaggattgatccaaaggctatgatttaaccctctcatc-tctcattttaaaactcatctcacttgata 162  Q
    ||||||||| |||||||| ||||| |||||||||| ||||||| | ||||||||||||| || ||||||||||||    
T  2071440 tcatggtaaagattgatctaaaggttatgatttaatcctctcaccctctcattttaaaagtcctctcacttgata 2071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 22914697 - 22914757
Alignment:
Q  127 tctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||||||| |||||||||||||| |||   | ||||||||||||||    
T  22914697 tctcatctctcattttaaaactcctctcacttgatacaccctatatatatatatatatata 22914757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 15248935 - 15248877
Alignment:
Q  104 atccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgata 162  Q
    |||||| || ||||||||||||||||||||||||| | |||||  | ||||||||||||    
T  15248935 atccaagggttatgatttaaccctctcatctctcactgtaaaagccctctcacttgata 15248877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 22913860 - 22913806
Alignment:
Q  133 ctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||| |||||||||||||| |||   | ||||||||||||||    
T  22913860 ctctcattttaaaactcttctcacttgatacaccctatatatatatatatatata 22913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 13505360 - 13505299
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||| |||| ||||| |||||||| |||   | ||||||||||||||    
T  13505360 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatatatatatata 13505299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 19139620 - 19139681
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||| |||| ||||| |||||||| |||   | ||||||||||||||    
T  19139620 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatatatatatata 19139681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 35653167 - 35653101
Alignment:
Q  117 gatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||    |||||||||||||||||||    
T  35653167 gatttaaccctctcatctctcacaataaaactcctctcacttgataca----ccctctatatatatatata 35653101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 35653830 - 35653900
Alignment:
Q  117 gatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    |||| |||||||||||||||||   |||||||| |||||||||||||| ||||  | ||||||||||||||    
T  35653830 gattcaaccctctcatctctcacaataaaactcctctcacttgatacaccctctatatatatatatatata 35653900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 8652012 - 8652076
Alignment:
Q  124 ccctctcatctctcatttt-aaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||   | ||||||||||||||    
T  8652012 ccctctcatctctcattttaaaaactcctctcatttgatacatcctatatatatatatatatata 8652076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 48058927 - 48059001
Alignment:
Q  89 tcatggtaaggattgatccaaaggctatgatttaaccctctcatc-tctcattttaaaactcatctcacttgata 162  Q
    |||||||||  |||||||||| || |||||||||| ||||||| | ||||||||||||| || ||| ||||||||    
T  48058927 tcatggtaaaaattgatccaagggttatgatttaatcctctcaccctctcattttaaaattcctcttacttgata 48059001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 36502342 - 36502427
Alignment:
Q  77 taaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgata 162  Q
    |||||||| || |||  |||| |||| |||||| || || |||| |||||||||||||||||   |||||||| ||||||||||||    
T  36502342 taaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataaaactcctctcacttgata 36502427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 11682151 - 11682042
Alignment:
Q  78 aaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctata 177  Q
    ||||||| || ||||||||| ||||||||||| |||| |||||||  ||||||| |||||||  |||||    |||||||||||||| ||||  | ||||    
T  11682151 aaaattaaatatcatggtaatgattgatccaagggctgtgatttactcctctcacctctcataataaaaacactctcacttgatacaccctctatatata 11682052  T
Q  178 tatatatata 187  Q
    ||||||||||    
T  11682051 tatatatata 11682042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 29647404 - 29647490
Alignment:
Q  99 gattgatccaaaggctatgatttaaccctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||| |||||| | ||||||| |||||||| ||||||||| || | |  ||||| ||||||||||  |||| ||||||||||||||    
T  29647404 gattgattcaaaggttgtgatttatccctctcacctctcatttaaagaatgctctcatttgatacatc--ccctatatatatatatata 29647490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 40269093 - 40268983
Alignment:
Q  77 taaaattagatctcatggtaaggattgatccaaaggctatgatttaaccctctcatctctcattttaa-aactcatctcacttgatacatcctccctcta 175  Q
    |||||||| || ||||||||| ||||||||||| || | | |||||||| ||||| |||| ||||||| ||||| |||||||||||| | || || | ||    
T  40269093 taaaattaaatatcatggtaatgattgatccaagggttgtcatttaaccttctcacctcttattttaagaactcttctcacttgatata-cccccatata 40268995  T
Q  176 tatatatatata 187  Q
    ||||||||||||    
T  40268994 tatatatatata 40268983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 24871700 - 24871639
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    |||||||||||||||||||||||| ||||| |||| |||||| |  | ||||||||||||||    
T  24871700 ctctcatctctcattttaaaactcctctcatttgaaacatcccctatatatatatatatata 24871639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 25746785 - 25746826
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcc 167  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  25746785 ctctcatctctcattttaaaactcctctcatttgatacatcc 25746826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 33574208 - 33574108
Alignment:
Q  89 tcatggtaaggattgatccaaaggctatgatttaaccctctcatc-tctcattttaaaac-tcatctcacttgatacatcctccctctatatatatatat 186  Q
    ||||||||| |||||||| ||||| ||| |||||| ||||||| | ||||||| |||||  || ||||||||||||||||| |  | |||||||||||||    
T  33574208 tcatggtaaagattgatctaaaggttataatttaatcctctcaccctctcattctaaaatgtcctctcacttgatacatcccctatatatatatatatat 33574109  T
Q  187 a 187  Q
    |    
T  33574108 a 33574108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 18861941 - 18861899
Alignment:
Q  118 atttaaccctctcatctctcattttaaaactcatctcacttga 160  Q
    |||||||||||||| |||||||||||||| || ||||||||||    
T  18861941 atttaaccctctcacctctcattttaaaagtcctctcacttga 18861899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 18862677 - 18862710
Alignment:
Q  99 gattgatccaaaggctatgatttaaccctctcat 132  Q
    |||||||||||||| |||||||||||||||||||    
T  18862677 gattgatccaaaggttatgatttaaccctctcat 18862710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 25745907 - 25745846
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||| |||||||||||||||||| ||||| |||| |||||||   | ||||||||||||||    
T  25745907 ctctcgtctctcattttaaaactcctctcatttgaaacatcctatatatatatatatatata 25745846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 7588197 - 7588236
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacat 165  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  7588197 ctctcatctctcattttaaaactcctctcatttgatacat 7588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 20378957 - 20379018
Alignment:
Q  125 cctctcatctctcattttaaa-actcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||||  | || ||||||||||||||||  |||| ||||||||||||||    
T  20378957 cctctcatctctcattttaactattcttctcacttgatacatc--ccctatatatatatatata 20379018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 138595 - 138534
Alignment:
Q  126 ctctcatctctcattttaaaactcatctcacttgatacatcctccctctatatatatatata 187  Q
    ||||||||||||||||||| |||| ||||| |||||||| |||   | ||||||||||||||    
T  138595 ctctcatctctcattttaacactcctctcatttgatacaccctatatatatatatatatata 138534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University