View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_85 (Length: 252)
Name: NF3929_low_85
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_85 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 2353051 - 2352827
Alignment:
| Q |
11 |
cacagattaaagtcatcatgtgcaaagttatgatagttaatgatcctattgtggcatgtctacatcagtgccacatttgatatgtaatgtcactttcttg |
110 |
Q |
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| T |
2353051 |
cacagattaaagtcatcatgtgcaaagttatgatagttaatgatcctattgtggcatgtctacatcggtgccacatttgatatgtaatgtcactttcttg |
2352952 |
T |
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| Q |
111 |
tagatcgaggatgggatgtttgatatattctgagaaaaaaccctggcctgcataattgtcttatctacaatacaactaagattttttaaactctaacgta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352951 |
tagatcgaggatgggatgtttgatatattctgagaaaaaaccctggcctgcataattgtcttatctacaatacaactaagattttttaaactctaacgta |
2352852 |
T |
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| Q |
211 |
taatcaaacccacttggtgcttact |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
2352851 |
taatcaaacccacttggtgcttact |
2352827 |
T |
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