View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_86 (Length: 251)
Name: NF3929_low_86
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_86 |
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| [»] scaffold0031 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 3280 - 3518
Alignment:
| Q |
12 |
agagaggtgaagcgatgttacctttgttagatcggagnnnnnnnctttagaaatggaaaacttcgagatccggaaaacttcacttgtttttacttctttt |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3280 |
agagaggtgaagtgatgttacctttgttagatcggagaaaaaaactttagaaatggaaaacttcgagatccggaaaacttcacttgtttttacttctttt |
3379 |
T |
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| Q |
112 |
cttctttgtttggctcgaaaatgttgatgttggtgatgaaacattcacgtctggattatggtgaagaaaaaccggttcagttttgggctagaccgattcg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
3380 |
cttctttgtttggctcgaaaatgttgatgttggtgatgaaaaattcacgtctggattatagtgaag-aaaaccggttcgattttgggctagaccgattcg |
3478 |
T |
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| Q |
212 |
gtttagtgatttttggtgtttatgtgatgtttcgaaaatt |
251 |
Q |
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| T |
3479 |
gtttagtgatttttggtgtttatgtgatgatttgaaaatt |
3518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 25653863 - 25654101
Alignment:
| Q |
12 |
agagaggtgaagcgatgttacctttgttagatcggagnnnnnnnctttagaaatggaaaacttcgagatccggaaaacttcacttgtttttacttctttt |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
25653863 |
agagaggtgaagtgatgttacctttgttagatcggagaaaaaaactttagaaatggaaaacttcaagatccgaaaaacttcacttgtttttacttctttt |
25653962 |
T |
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| Q |
112 |
cttctttgtttggctcgaaaatgttgatgttggtgatgaaacattcacgtctggattatggtgaagaaaaaccggttcagttttgggctagaccgattcg |
211 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
25653963 |
cttctttgtttggctcgaaaatgttgattttggtgatgaaaaattcccgtctggattatagtgaag-aaaaccggttcggttttgggctagaccaattcg |
25654061 |
T |
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| Q |
212 |
gtttagtgatttttggtgtttatgtgatgtttcgaaaatt |
251 |
Q |
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| T |
25654062 |
gtttagtgttttttggtgtttatgtgatgattcgaaaatt |
25654101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 18008592 - 18008513
Alignment:
| Q |
72 |
cttcgagatccggaaaacttcacttgtttttacttcttttcttctttgtttggctcgaaaatgttgatgttggtgatgaa |
151 |
Q |
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|||| |||||||||| ||||||||| |||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
18008592 |
cttctagatccggaatacttcacttcattttccttctcttcttctttgcttgactcgaaattgttggtgttggtgatgaa |
18008513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 19646746 - 19646825
Alignment:
| Q |
72 |
cttcgagatccggaaaacttcacttgtttttacttcttttcttctttgtttggctcgaaaatgttgatgttggtgatgaa |
151 |
Q |
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|||| |||| ||||| | ||||||| |||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
19646746 |
cttctagattcggaatatttcacttcattttccttctcttcttctttgcttgactcgaaattgttggtgttggtgatgaa |
19646825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 30115086 - 30114982
Alignment:
| Q |
147 |
atgaaacattcacgtctggattatggtgaagaaaaaccggttcagttttgggctagaccgattcggtttagtgatttttggtgtttatgtgatgtttcga |
246 |
Q |
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|||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30115086 |
atgaaaaattcacgtctggattgtggtgaaaaaaaaccggttcggttttgggctagagcgattcggtttagtgatttttggtgtttatgtgatgattcga |
30114987 |
T |
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| Q |
247 |
aaatt |
251 |
Q |
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||||| |
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| T |
30114986 |
aaatt |
30114982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 13273419 - 13273340
Alignment:
| Q |
72 |
cttcgagatccggaaaacttcacttgtttttacttcttttcttctttgtttggctcgaaaatgttgatgttggtgatgaa |
151 |
Q |
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|||| |||||||||| ||||||||| |||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
13273419 |
cttctagatccggaatacttcacttcattttccttctcttcttctttgcttgactcgaaattgttggtgttggtgatgaa |
13273340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 27977290 - 27977211
Alignment:
| Q |
72 |
cttcgagatccggaaaacttcacttgtttttacttcttttcttctttgtttggctcgaaaatgttgatgttggtgatgaa |
151 |
Q |
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|||| |||||||||| ||||||||| |||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
27977290 |
cttctagatccggaatacttcacttcattttccttctcttcttctttgcttgactcgaaattgttggtgttggtgatgaa |
27977211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 5448 - 5527
Alignment:
| Q |
72 |
cttcgagatccggaaaacttcacttgtttttacttcttttcttctttgtttggctcgaaaatgttgatgttggtgatgaa |
151 |
Q |
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|||| |||||||||| | ||||||| |||| ||||| |||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
5448 |
cttctagatccggaatatttcacttcattttccttctcttcttctttgcttgactcgaaattgttggtgttggtgatgaa |
5527 |
T |
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