View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_88 (Length: 251)

Name: NF3929_low_88
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_88
NF3929_low_88
[»] chr4 (15 HSPs)
chr4 (152-235)||(42693849-42693932)
chr4 (113-230)||(41075897-41076014)
chr4 (81-151)||(42694485-42694555)
chr4 (100-211)||(43868197-43868308)
chr4 (109-197)||(2206596-2206684)
chr4 (112-211)||(4243460-4243560)
chr4 (108-196)||(55927698-55927786)
chr4 (114-217)||(22250301-22250404)
chr4 (156-211)||(34155810-34155865)
chr4 (100-134)||(16552016-16552050)
chr4 (108-193)||(1023849-1023934)
chr4 (157-194)||(2208815-2208852)
chr4 (108-152)||(1616459-1616503)
chr4 (165-217)||(24364099-24364151)
chr4 (112-152)||(35065136-35065176)
[»] chr8 (17 HSPs)
chr8 (100-216)||(32927953-32928069)
chr8 (102-211)||(9461452-9461560)
chr8 (118-214)||(10368044-10368140)
chr8 (102-214)||(18123289-18123401)
chr8 (100-196)||(18356018-18356113)
chr8 (108-196)||(26100074-26100162)
chr8 (111-217)||(38335769-38335874)
chr8 (100-151)||(37684466-37684517)
chr8 (119-196)||(5219199-5219276)
chr8 (103-196)||(35495054-35495147)
chr8 (108-171)||(16972017-16972080)
chr8 (158-208)||(4662823-4662873)
chr8 (108-177)||(2778582-2778651)
chr8 (100-133)||(36200120-36200153)
chr8 (108-144)||(3279039-3279075)
chr8 (108-168)||(4554575-4554635)
chr8 (122-170)||(24774972-24775020)
[»] chr7 (11 HSPs)
chr7 (111-217)||(40491650-40491756)
chr7 (109-182)||(45557435-45557508)
chr7 (100-171)||(17111906-17111977)
chr7 (119-191)||(1442651-1442723)
chr7 (100-153)||(32295245-32295298)
chr7 (108-168)||(40561714-40561774)
chr7 (109-171)||(38123619-38123681)
chr7 (107-197)||(40795916-40796006)
chr7 (94-177)||(25156255-25156338)
chr7 (103-153)||(26023876-26023926)
chr7 (94-134)||(39956282-39956322)
[»] chr6 (17 HSPs)
chr6 (101-215)||(46197-46311)
chr6 (100-216)||(765293-765412)
chr6 (114-151)||(6895923-6895960)
chr6 (100-163)||(3289806-3289868)
chr6 (92-170)||(434191-434269)
chr6 (108-166)||(34620955-34621013)
chr6 (108-166)||(34748392-34748450)
chr6 (102-134)||(947628-947660)
chr6 (91-151)||(25195339-25195399)
chr6 (111-182)||(882758-882829)
chr6 (108-211)||(9505839-9505942)
chr6 (100-194)||(25195911-25196003)
chr6 (108-214)||(8856376-8856482)
chr6 (100-150)||(16540168-16540218)
chr6 (94-196)||(29338525-29338627)
chr6 (100-137)||(17225913-17225950)
chr6 (108-196)||(3524994-3525082)
[»] chr3 (10 HSPs)
chr3 (100-196)||(31708167-31708263)
chr3 (100-215)||(31013079-31013194)
chr3 (108-209)||(37334949-37335050)
chr3 (112-197)||(52925550-52925635)
chr3 (108-216)||(35264319-35264427)
chr3 (100-170)||(35253421-35253491)
chr3 (151-196)||(46943248-46943293)
chr3 (106-182)||(14022040-14022116)
chr3 (110-163)||(7262885-7262938)
chr3 (113-201)||(584716-584804)
[»] chr2 (13 HSPs)
chr2 (100-211)||(680204-680314)
chr2 (94-194)||(5532962-5533061)
chr2 (100-182)||(4894099-4894181)
chr2 (100-170)||(16518839-16518909)
chr2 (102-151)||(11504035-11504084)
chr2 (94-151)||(33019129-33019186)
chr2 (112-211)||(37287848-37287947)
chr2 (100-134)||(8800688-8800722)
chr2 (108-194)||(15220791-15220877)
chr2 (100-162)||(44670850-44670912)
chr2 (102-151)||(43501186-43501235)
chr2 (156-196)||(43501224-43501264)
chr2 (157-209)||(45000423-45000475)
[»] chr1 (14 HSPs)
chr1 (100-217)||(7524174-7524291)
chr1 (100-211)||(11817230-11817341)
chr1 (101-171)||(34915128-34915198)
chr1 (100-201)||(35961429-35961530)
chr1 (157-217)||(47899371-47899431)
chr1 (99-167)||(48548971-48549039)
chr1 (127-213)||(3515895-3515981)
chr1 (108-187)||(5268288-5268367)
chr1 (95-214)||(28267820-28267938)
chr1 (100-150)||(30557563-30557613)
chr1 (81-130)||(30850393-30850440)
chr1 (100-129)||(2555962-2555991)
chr1 (108-193)||(52339659-52339744)
chr1 (100-152)||(32370003-32370055)
[»] scaffold0361 (1 HSPs)
scaffold0361 (108-194)||(14044-14130)
[»] chr5 (4 HSPs)
chr5 (108-201)||(35138946-35139039)
chr5 (111-217)||(117405-117509)
chr5 (94-172)||(6951257-6951335)
chr5 (100-169)||(31906320-31906389)
[»] scaffold0767 (1 HSPs)
scaffold0767 (100-211)||(2904-3016)
[»] scaffold0168 (1 HSPs)
scaffold0168 (110-150)||(31900-31940)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 42693932 - 42693849
Alignment:
Q  152 acctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaattcttgtctaatctcaaccaatatac 235  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  42693932 acctacaactcaattttagttagaataaattttacagagtcaatttactccaaatcaattcttgtctaatctcaaccaatatac 42693849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 41075897 - 41076014
Alignment:
Q  113 ctcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaattc 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| || ||||||||| | ||||  ||     
T  41075897 ctcacttttatatgaatgtatcaaaaaacaaaccactttacctacaactcatttttagttagattaaattctacagaaccaatttacttcgaatcggttt 41075996  T
Q  213 ttgtctaatctcaaccaa 230  Q
    ||||| ||||||||||||    
T  41075997 ttgtcaaatctcaaccaa 41076014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 42694555 - 42694485
Alignment:
Q  81 ttgattttaacatacatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42694555 ttgattctaacatacatacatttataattcaactcacttttacatgaatatatcaaaaaacaaaccacttt 42694485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 43868197 - 43868308
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    |||||||||| || |||||||||||| |||||||| ||| ||||| |||||||| | ||||| | |||||  |||||| ||||||||| |||||||| |     
T  43868197 atttataatttaagtcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcat 43868296  T
Q  200 tccaaatcaatt 211  Q
    || |||||||||    
T  43868297 tcaaaatcaatt 43868308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 2206596 - 2206684
Alignment:
Q  109 tcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaattt 197  Q
    |||||||||||| |||| |||| ||| ||||| ||| ||||| |||| |||||||||||| || ||||| ||||||||| |||||||||    
T  2206596 tcaactcactttcacattaatgcatccaaaaataaatcacttcaccttcaactcaattttcgtcagaatcaattttacaaaatcaattt 2206684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 4243460 - 4243560
Alignment:
Q  112 actcacttttacatgaatgtatcaaaaa-acaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaat 210  Q
    |||||||||||||| ||||| || |||| | ||| ||||||||||||| || | |||||||  |||| |||||||||||||| ||  |||| ||||||||    
T  4243460 actcacttttacatcaatgtctccaaaacaaaaatcactttacctacatcttacttttagtcggaatcaattttacataatctatcaactcaaaatcaat 4243559  T
Q  211 t 211  Q
    |    
T  4243560 t 4243560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 55927786 - 55927698
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    ||||| ||||||||||||||||||||| ||| | ||| ||| ||| || |||||||||||||  | |||| ||||||||  ||||||||    
T  55927786 ttcaagtcacttttacatgaatgtatccaaacataaatcacattaactccaactcaattttaactggaatcaattttacgaaatcaatt 55927698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 22250301 - 22250404
Alignment:
Q  114 tcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaattct 213  Q
    ||||||||||||||||||||| |||   ||| ||||| || | ||||||  ||||||| | ||| ||||||||| ||||||||  ||| ||||||||| |    
T  22250301 tcacttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaaaatcaattgt 22250400  T
Q  214 tgtc 217  Q
    ||||    
T  22250401 tgtc 22250404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 34155810 - 34155865
Alignment:
Q  156 acaactcaattttagttagaataaattttacataatcaatttactccaaatcaatt 211  Q
    |||||||| ||||||||||||| ||||||||||||| |||| |||| ||| |||||    
T  34155810 acaactcacttttagttagaatcaattttacataattaattcactcaaaaacaatt 34155865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 16552016 - 16552050
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatc 134  Q
    ||||||| |||||||||||||||||||||||||||    
T  16552016 atttatagttcaactcacttttacatgaatgtatc 16552050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 1023934 - 1023849
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatca 193  Q
    ||||||||||||| |||| ||| |||| ||| | ||| |||||||||| ||||||| |||||| || ||| | ||||||| |||||    
T  1023934 ttcaactcactttcacatcaatatatccaaacaaaaatcactttaccttcaactcacttttagctaaaatcatttttacagaatca 1023849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 2208815 - 2208852
Alignment:
Q  157 caactcaattttagttagaataaattttacataatcaa 194  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  2208815 caactcgattttagttagaataaattttacacaatcaa 2208852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 1616459 - 1616503
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccacttta 152  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||||    
T  1616459 ttcaactcatttttacatgaatgtattcaaacacaaaccacttta 1616503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 24364151 - 24364099
Alignment:
Q  165 ttttagttagaataaattttacataatcaatttactccaaatcaattcttgtc 217  Q
    ||||||| ||||| |||||||||||||||||| | || ||||||||| |||||    
T  24364151 ttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtc 24364099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 35065136 - 35065176
Alignment:
Q  112 actcacttttacatgaatgtatcaaaaaacaaaccacttta 152  Q
    ||||||||||||||||||||||| ||| ||||| |||||||    
T  35065136 actcacttttacatgaatgtatccaaacacaaatcacttta 35065176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 32927953 - 32928069
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||| |||||| ||| ||||||||||||||| ||||| ||||||||||||||||||  |    
T  32927953 atttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccc 32928052  T
Q  200 tccaaatcaattcttgt 216  Q
    || ||||||||| ||||    
T  32928053 tcaaaatcaattattgt 32928069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 9461560 - 9461452
Alignment:
Q  102 ttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactc 201  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||| |||||||  | ||| || |||||||| ||||| ||||||| |||||||||| ||||    
T  9461560 ttataattcaactcacttttatatgaatgtatccaaacacaaatcactttagttgcaattc-attttagtcagaatcaattttaaataatcaattaactc 9461462  T
Q  202 caaatcaatt 211  Q
     |||||||||    
T  9461461 aaaatcaatt 9461452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 10368044 - 10368140
Alignment:
Q  118 ttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaattctt 214  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||| | | ||| ||||||||| || ||||| |||| ||||||||||||    
T  10368044 ttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaattctt 10368140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 18123289 - 18123401
Alignment:
Q  102 ttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactc 201  Q
    ||||| |||||||||||||||||| ||| |||   || ||||| || ||||||| ||| ||| ||||||||||| |  ||||||||| ||||||| ||||    
T  18123289 ttatagttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactc 18123388  T
Q  202 caaatcaattctt 214  Q
     ||||||||||||    
T  18123389 taaatcaattctt 18123401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 18356113 - 18356018
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    |||||||||||||||||| |||| || ||||||||  || | ||||| | |||||| ||||||| ||||||||||||| || |||||||||||||||    
T  18356113 atttataattcaactcacgtttagataaatgtatccgaacataaacccccttaccttcaactcacttttagttagaatcaa-tttacataatcaatt 18356018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 26100162 - 26100074
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    |||||||||||||||||| |||| ||| ||| |||||   |||||||| ||||||  ||||||| ||||| ||||||||||||||||||    
T  26100162 ttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtcagaatcaattttacataatcaatt 26100074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 38335874 - 38335769
Alignment:
Q  111 aactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaat 210  Q
    ||||||||||||||||||||||||  || ||||| || || |||| ||||||| ||||| | | ||| ||||||||||  |||||| |||| ||||||||    
T  38335874 aactcacttttacatgaatgtatccgaacacaaatcaattcaccttcaactcacttttaatca-aattaattttacattgtcaattaactcaaaatcaat 38335776  T
Q  211 tcttgtc 217  Q
    |||||||    
T  38335775 tcttgtc 38335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 37684466 - 37684517
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  37684466 atttataattcaactcacttttacataaatgtatccaaacacaaatcacttt 37684517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 5219199 - 5219276
Alignment:
Q  119 tttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    |||| ||||||||||||||||||||| |||||||  |  |||| | ||||||| | ||| ||||||||||||||||||    
T  5219199 tttatatgaatgtatcaaaaaacaaatcactttatttgtaacttatttttagtcaaaatcaattttacataatcaatt 5219276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 35495054 - 35495147
Alignment:
Q  103 tataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    |||| ||||||| |||||||||||||| |||| ||| ||||| |||||||  | |||| || ||||| | ||||  ||||||||||||||||||    
T  35495054 tatagttcaacttacttttacatgaatatatccaaacacaaatcactttatattcaacccacttttaatcagaagcaattttacataatcaatt 35495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 16972080 - 16972017
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagt 171  Q
    ||||| ||||||||||||||||||||  ||| ||||| || ||||||| ||||||| |||||||    
T  16972080 ttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagt 16972017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 4662873 - 4662823
Alignment:
Q  158 aactcaattttagttagaataaattttacataatcaatttactccaaatca 208  Q
    |||||| ||||||| ||||| |||||||||||||||||| |||| ||||||    
T  4662873 aactcagttttagtcagaatcaattttacataatcaattcactcaaaatca 4662823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 2778582 - 2778651
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaat 177  Q
    |||||||||||||| ||| ||| |||| ||||| ||| ||||||| || ||||||| |||||| ||||||    
T  2778582 ttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagctagaat 2778651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 36200153 - 36200120
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtat 133  Q
    ||||||||||||| ||||||||||||||||||||    
T  36200153 atttataattcaattcacttttacatgaatgtat 36200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 3279039 - 3279075
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaa 144  Q
    |||||||||||||||||||||| |||| |||||||||    
T  3279039 ttcaactcacttttacatgaatatatccaaaaacaaa 3279075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 4554575 - 4554635
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaatttt 168  Q
    |||||| | |||||||| ||||||||||||| ||||| ||  |||||| ||||||||||||    
T  4554575 ttcaacccgcttttacaggaatgtatcaaaacacaaatcatcttaccttcaactcaatttt 4554635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 24775020 - 24774972
Alignment:
Q  122 acatgaatgtatcaaaaaacaaaccactttacctacaactcaattttag 170  Q
    ||||||| ||||| ||| | |||| ||||||||||||||||||||||||    
T  24775020 acatgaaagtatccaaacataaactactttacctacaactcaattttag 24774972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 40491650 - 40491756
Alignment:
Q  111 aactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaat 210  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| ||||||| | ||| ||||||||| |||||||| |||| ||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  211 tcttgtc 217  Q
    |||||||    
T  40491750 tcttgtc 40491756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 45557435 - 45557508
Alignment:
Q  109 tcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaatt 182  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||| ||||||| ||||| ||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 17111906 - 17111977
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagt 171  Q
    ||||||||||| ||||| ||||||||||||| ||| ||| ||||| |||||||||||||| |||||||||||    
T  17111906 atttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagt 17111977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 1442651 - 1442723
Alignment:
Q  119 tttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataat 191  Q
    |||||||||||||||| | | | |||||||||||||| ||||||| ||||||| ||||| |||||||||||||    
T  1442651 tttacatgaatgtatccatacataaaccactttacctgcaactcacttttagtcagaatcaattttacataat 1442723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 32295245 - 32295298
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttac 153  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||| ||||||||    
T  32295245 atttataattcaactcacttttacataaatgtattaaaacacaaatcactttac 32295298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 40561774 - 40561714
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaatttt 168  Q
    ||||||||||||||||||||||||||| ||| | ||| |||||||| | ||||||||||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 38123681 - 38123619
Alignment:
Q  109 tcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagt 171  Q
    ||||||||||||||||||||||| ||  || |||||  ||||||||| |||||||||||||||    
T  38123681 tcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaactcaattttagt 38123619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 40796006 - 40795916
Alignment:
Q  107 attcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaattt 197  Q
    |||||| ||||||||||||||||||||| ||  | |||||||||||||| ||| ||| |||||  ||  || ||||||||| |||||||||    
T  40796006 attcaaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcatttttacctaacatcaattttacaaaatcaattt 40795916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 25156255 - 25156338
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaat 177  Q
    ||||| ||| |||| |||||||||||||| ||||||||||  ||| ||||| || |||| || ||||||| ||||||| |||||    
T  25156255 acataaattaataaatcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagtcagaat 25156338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 26023876 - 26023926
Alignment:
Q  103 tataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttac 153  Q
    |||||||||| | |||||||||| |||||||||||| ||||| ||||||||    
T  26023876 tataattcaaataacttttacataaatgtatcaaaacacaaatcactttac 26023926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 39956282 - 39956322
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatc 134  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  39956282 acataaatttataattcaactcacttttatgtgaatgtatc 39956322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 46311 - 46197
Alignment:
Q  101 tttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttact 200  Q
    ||||||||||||||||||||| || ||||||||| ||| |||||  ||||||  | ||||||| ||||||||||||| ||||||||| |||||||| |||    
T  46311 tttataattcaactcacttttccacgaatgtatccaaacacaaataactttaattgcaactcacttttagttagaatcaattttacagaatcaattcact 46212  T
Q  201 ccaaatcaattcttg 215  Q
    | |||||||||||||    
T  46211 caaaatcaattcttg 46197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 765412 - 765293
Alignment:
Q  100 atttataattcaactcacttttacatgaa---tgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    ||||||| ||||||||| ||||||| |||   |||||  ||| ||||| |||||||| | ||||| | ||||||||||||| ||||||||| ||||| ||    
T  765412 atttatagttcaactcatttttacaagaagaatgtatggaaacacaaatcactttactttcaacttacttttagttagaatcaattttacacaatcattt 765313  T
Q  197 tactccaaatcaattcttgt 216  Q
     |||| ||||||||| ||||    
T  765312 cactcaaaatcaattgttgt 765293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 6895960 - 6895923
Alignment:
Q  114 tcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6895960 tcacttttacatgaatgtatcaaaaaacaaaccacttt 6895923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 3289806 - 3289868
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactca 163  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||| ||||||| || |||||||    
T  3289806 atttataattcaactcacttttacat-aatgtatccaaacacaaatcactttatctgcaactca 3289868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 434269 - 434191
Alignment:
Q  92 atacatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttag 170  Q
    ||||||| ||||| | ||||||||||||||||| |||| |||| ||| ||||| || ||||||| ||||||| ||||||    
T  434269 atacataaatttaaatttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcacttttag 434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 34620955 - 34621013
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaatt 166  Q
    |||||||||||||||||| |||||||| ||| | ||| |||||||||| ||||||||||    
T  34620955 ttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34621013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 34748392 - 34748450
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaatt 166  Q
    |||||||||||||||||| |||||||| ||| | ||| |||||||||| ||||||||||    
T  34748392 ttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaatt 34748450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 947628 - 947660
Alignment:
Q  102 ttataattcaactcacttttacatgaatgtatc 134  Q
    |||||||||||||||||||||||||||||||||    
T  947628 ttataattcaactcacttttacatgaatgtatc 947660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 25195399 - 25195339
Alignment:
Q  91 catacatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    |||||| | ||||| |||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  25195399 catacacaaatttacaattcaactcacttttacataaatgtatccaaacacaaatcacttt 25195339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 882758 - 882829
Alignment:
Q  111 aactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaatt 182  Q
    ||||||||||| |||||||||||| ||| | ||| || ||||||| |||||||||||||  |||||| ||||    
T  882758 aactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaatt 882829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 9505839 - 9505942
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatc 207  Q
    |||||| ||||||||||||||| ||| | || | | | |||||| ||| ||||||||||||||  | |||||| |||||| |||||||| | || |||||    
T  9505839 ttcaacacacttttacatgaatatataataacatatatcactttgccttcaactcaattttagccaaaataaactttacagaatcaattcattcaaaatc 9505938  T
Q  208 aatt 211  Q
    ||||    
T  9505939 aatt 9505942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 25195911 - 25196003
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaa 194  Q
    ||||||| ||||||||||  |||||| |||||||| ||| |||||| ||||| ||  ||||||| |||||||| |||| || |||||| ||||||    
T  25195911 atttatagttcaactcac--ttacataaatgtatccaaacacaaacaactttgccctcaactcatttttagttggaatcaaatttacagaatcaa 25196003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 8856376 - 8856482
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatc 207  Q
    ||||||||||||| ||||||||||||| ||| ||||| || ||||||| ||||  | ||||| | | | | ||||| |||| ||||||||  || |||||    
T  8856376 ttcaactcactttcacatgaatgtatccaaacacaaatcattttaccttcaaccaacttttaataaaattcaatttgacatgatcaattttttcaaaatc 8856475  T
Q  208 aattctt 214  Q
    |||||||    
T  8856476 aattctt 8856482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 16540168 - 16540218
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactt 150  Q
    ||||||| || ||||||||||||||| |||||||| ||| |||||||||||    
T  16540168 atttatagttaaactcacttttacatcaatgtatccaaacacaaaccactt 16540218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 29338627 - 29338525
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatca 193  Q
    ||||| |||| |||||||| |||||||||||| ||| |||| ||| | ||| ||||||  | |||||||| ||||| | ||||| ||||||| | |||||    
T  29338627 acataaatttttaattcaattcacttttacataaatatatccaaacataaatcactttttcaacaactcatttttaataagaatcaattttaaaaaatca 29338528  T
Q  194 att 196  Q
    |||    
T  29338527 att 29338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 17225913 - 17225950
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaa 137  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  17225913 atttatagttcaactcagttttacatgaatgtatcaaa 17225950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 3524994 - 3525082
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    ||||||| |||||||||| |||||||  ||| | |||||| ||| | | ||||||| ||||||  | ||| ||||||||||||||||||    
T  3524994 ttcaactgacttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaatt 3525082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 31708263 - 31708167
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |  ||||||| |||||||   ||| ||||||||| ||||||||    
T  31708263 atttataattcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttagtcctaatcaattttacaaaatcaatt 31708167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 31013079 - 31013194
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||| |||||||||||||| |||||||||| ||| ||| ||||| ||||||| |||||||||| |||||||  |||| |||||||   |||||||| ||    
T  31013079 atttagaattcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagtcggaatcaattttatggaatcaattcac 31013178  T
Q  200 tccaaatcaattcttg 215  Q
    || |||||||||||||    
T  31013179 tcaaaatcaattcttg 31013194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 37335050 - 37334949
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatc 207  Q
    ||||||||| ||||| ||||||||||  | | | ||| |||||||||| |||||||||||||||  |||| ||||||| |||||||||| |||  |||||    
T  37335050 ttcaactcatttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaattttatataatcaattcacttaaaatc 37334951  T
Q  208 aa 209  Q
    ||    
T  37334950 aa 37334949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 52925635 - 52925550
Alignment:
Q  112 actcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaattt 197  Q
    |||| ||||||||| |  ||||| ||| | |||||||||||| | ||||||||||||||| ||||| ||||||||| |||||||||    
T  52925635 actcgcttttacattacggtatccaaacataaaccactttactttcaactcaattttagtgagaatcaattttacaaaatcaattt 52925550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 35264427 - 35264319
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatc 207  Q
    ||||| ||| ||||||||||||||| | ||| | ||  |||||||| | ||||||| |||| |||| ||| ||||||||| |||||||| |||| |||||    
T  35264427 ttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattcactcaaaatc 35264328  T
Q  208 aattcttgt 216  Q
    |||| ||||    
T  35264327 aattattgt 35264319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 35253491 - 35253421
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttag 170  Q
    |||||| ||||||||||||||||||||| ||| || ||| | ||| ||||||||||  |||||||||||||    
T  35253491 atttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 35253421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 46943293 - 46943248
Alignment:
Q  151 tacctacaactcaattttagttagaataaattttacataatcaatt 196  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||    
T  46943293 tacctacaactcaattttagtcagaatcaattttacagaatcaatt 46943248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 14022040 - 14022116
Alignment:
Q  106 aattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaatt 182  Q
    |||||| |||| ||||| ||||||||||| ||| |||||  |||||| || ||||||| |||||| |||||||||||    
T  14022040 aattcagctcaattttaaatgaatgtatccaaacacaaattactttatctgcaactcacttttagatagaataaatt 14022116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 7262885 - 7262938
Alignment:
Q  110 caactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactca 163  Q
    ||||||||||||||||||||||||||||| | ||| || | ||||| |||||||    
T  7262885 caactcacttttacatgaatgtatcaaaacataaaacattataccttcaactca 7262938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 584804 - 584716
Alignment:
Q  113 ctcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactc 201  Q
    ||||||||||||| |||||||| ||| | ||| |  |||| || ||||| |||||||| || ||| ||||||||| |||||||| ||||    
T  584804 ctcacttttacataaatgtatccaaacagaaatccatttagcttcaacttaattttagctaaaatcaattttacaaaatcaattcactc 584716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 680314 - 680204
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||| ||||||||||||||||||||||||||||  ||| ||||| |||||||||| |||||||| |||||  ||| | || ||||||||||||||| ||    
T  680314 atttagaattcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactcaa-tttagacagactcaactttacataatcaattcac 680216  T
Q  200 tccaaatcaatt 211  Q
    || |||||||||    
T  680215 tcaaaatcaatt 680204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 5533061 - 5532962
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatca 193  Q
    ||||| |||||||||||||||||| |||||||||| ||||| |||||||||  | ||||| |  |||||| |||||| || ||| |||||||||||||||    
T  5533061 acataaatttataattcaactcacatttacatgaacgtatccaaaaacaaataagtttacttgtaactcacttttag-tataatcaattttacataatca 5532963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 4894181 - 4894099
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaatt 182  Q
    |||||| |||||| ||||||||| ||||||||||| ||| | ||| |||||||||| ||||| |||||||| |||||| ||||    
T  4894181 atttattattcaagtcacttttaaatgaatgtatctaaacataaatcactttaccttcaacttaattttagctagaatcaatt 4894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 16518839 - 16518909
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttag 170  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||| || ||||||  ||||||| ||||||    
T  16518839 atttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 11504084 - 11504035
Alignment:
Q  102 ttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    ||||| |||||||||||||||||||||||||| |||| ||||| ||||||    
T  11504084 ttatagttcaactcacttttacatgaatgtattaaaacacaaatcacttt 11504035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 33019186 - 33019129
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| ||| ||||| ||||||    
T  33019186 acataaatttatagttcaactcacttttacatgaatgcatccaaacacaaatcacttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 37287848 - 37287947
Alignment:
Q  112 actcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactc-aattttagttagaataaattttacataatcaatttactccaaatcaat 210  Q
    ||||||| ||||||||||||||  ||| | |||  | ||||||| |||||  |||||| |||||||||| || |||||||||||||||||| ||||||||    
T  37287848 actcactattacatgaatgtatataaacataaattattttaccttcaactttaatttttgttagaataa-ttctacataatcaatttactcaaaatcaat 37287946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 8800722 - 8800688
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatc 134  Q
    ||||||||||||||||||||||||||||| |||||    
T  8800722 atttataattcaactcacttttacatgaacgtatc 8800688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 15220877 - 15220791
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaa 194  Q
    ||||||||||||| ||||||||||||| ||| | ||| |||||||| | ||||||| |||| || | ||| ||| ||||| ||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaatattacaaaatcaa 15220791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 44670912 - 44670850
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactc 162  Q
    ||||| |||||||||||||||||  |||||||||||||| ||| | |||||||| | ||||||    
T  44670912 atttaaaattcaactcacttttaagtgaatgtatcaaaacacatatcactttacattcaactc 44670850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 43501186 - 43501235
Alignment:
Q  102 ttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttt 151  Q
    ||||||||||||||| ||||||||||||||||  ||| ||||| ||||||    
T  43501186 ttataattcaactcagttttacatgaatgtatacaaacacaaatcacttt 43501235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 43501224 - 43501264
Alignment:
Q  156 acaactcaattttagttagaataaattttacataatcaatt 196  Q
    |||| ||| ||||||| ||||||||||||||||||||||||    
T  43501224 acaaatcacttttagtcagaataaattttacataatcaatt 43501264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 45000475 - 45000423
Alignment:
Q  157 caactcaattttagttagaataaattttacataatcaatttactccaaatcaa 209  Q
    ||||||| |||||| || ||| |||||||||||||||||||| || |||||||    
T  45000475 caactcacttttaggtaaaatcaattttacataatcaatttattcaaaatcaa 45000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 7524174 - 7524291
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||||| |||||||||||||||||| ||||| || ||| ||||| ||||||||||  | |||| ||||||||||||| ||||||| | ||||| || ||    
T  7524174 atttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatcagttcac 7524273  T
Q  200 tccaaatcaattcttgtc 217  Q
     | ||||||||| |||||    
T  7524274 ccaaaatcaattattgtc 7524291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 11817341 - 11817230
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||||| ||||||| |||||||||| |||||||  ||| | ||| || |||| || ||||||  ||||||||||||| ||||||||| |||||||| ||    
T  11817341 atttatagttcaactaacttttacattaatgtattcaaataaaaatcattttatcttcaactcgcttttagttagaatcaattttacaaaatcaattcac 11817242  T
Q  200 tccaaatcaatt 211  Q
    || || ||||||    
T  11817241 tcaaactcaatt 11817230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 34915128 - 34915198
Alignment:
Q  101 tttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagt 171  Q
    |||||||||||||||||||||||||||||||||  ||| | ||| || ||||||| ||||||| |||||||    
T  34915128 tttataattcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagt 34915198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 35961429 - 35961530
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttac 199  Q
    ||||| ||||||||||||||||||||||||||||  ||| | ||| || ||||||| ||||||| ||||||    |||  |||||||| |||||||||||    
T  35961429 atttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagccgtaatctattttacagaatcaatttac 35961528  T
Q  200 tc 201  Q
    ||    
T  35961529 tc 35961530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 47899371 - 47899431
Alignment:
Q  157 caactcaattttagttagaataaattttacataatcaatttactccaaatcaattcttgtc 217  Q
    ||||||| ||||||| ||||| ||||||||| |||||||| |||| |||||||||||||||    
T  47899371 caactcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaattcttgtc 47899431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 48549039 - 48548971
Alignment:
Q  99 catttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattt 167  Q
    |||||||  |||||||||||||||||| |||||||||||| | ||| || ||||||| |||||||||||    
T  48549039 catttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactcaattt 48548971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 3515895 - 3515981
Alignment:
Q  127 aatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaattct 213  Q
    |||||||| ||| ||||| ||||| |||| ||||||||||||    ||||| |||||||||||||||||| |||| ||| |||||||    
T  3515895 aatgtatccaaacacaaatcacttcaccttcaactcaattttcaccagaatcaattttacataatcaattcactcaaaaccaattct 3515981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 5268288 - 5268367
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttaca 187  Q
    |||||||||||||||||||||| |||  ||| | ||| |||||||| | ||||||| ||||||  ||||| |||||||||    
T  5268288 ttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaattttaca 5268367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 28267938 - 28267820
Alignment:
Q  95 catacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaa 194  Q
    |||| ||||||||||||| | ||||||||||||||||||  ||  || ||| |||||| || |||||| | |||||| | ||| ||||||||| ||| ||    
T  28267938 cataaatttataattcaagttacttttacatgaatgtatttaatcacgaactactttatctccaactc-actttagtcataatcaattttacaaaattaa 28267840  T
Q  195 tttactccaaatcaattctt 214  Q
    ||  ||| ||||||||||||    
T  28267839 ttcgctcgaaatcaattctt 28267820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 30557563 - 30557613
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactt 150  Q
    ||||||| ||||||||||||||| ||||||||||| ||| ||||| |||||    
T  30557563 atttatagttcaactcacttttatatgaatgtatccaaacacaaatcactt 30557613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 30850440 - 30850393
Alignment:
Q  81 ttgattttaacatacatacatttataattcaactcacttttacatgaatg 130  Q
    |||||||||||||||| |  |||||| |||||||||||||||||||||||    
T  30850440 ttgattttaacatacaaa--tttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 2555962 - 2555991
Alignment:
Q  100 atttataattcaactcacttttacatgaat 129  Q
    ||||||||||||||||||||||||||||||    
T  2555962 atttataattcaactcacttttacatgaat 2555991  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 52339744 - 52339659
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatca 193  Q
    ||||| |||| |||||| ||||||||  ||| | |||  | ||||||| |||||||||||||   |||||||||||||||||||||    
T  52339744 ttcaagtcacatttacacgaatgtatataaatataaataattttaccttcaactcaattttaagcagaataaattttacataatca 52339659  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 32370055 - 32370003
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccacttta 152  Q
    |||||||||| ||||  |||||||||||||||||| ||| ||||| |||||||    
T  32370055 atttataattgaacttgcttttacatgaatgtatccaaacacaaatcacttta 32370003  T

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Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 14130 - 14044
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaa 194  Q
    ||||||||||||| ||||||||||||| ||| | ||| |||||||||| |||||||||| |||  ||||| ||||||||| ||||||    
T  14130 ttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaattttacaaaatcaa 14044  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 35139039 - 35138946
Alignment:
Q  108 ttcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactc 201  Q
    ||||||||||||| | |||||||||||  || | ||| || ||||||| ||||||||||||||  ||||| || ||||||||||||||| ||||    
T  35139039 ttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattcactc 35138946  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 117509 - 117405
Alignment:
Q  111 aactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaatttactccaaatcaat 210  Q
    |||||||||||||||  ||||||| ||| |  || || ||||||| ||||||| || |||| ||||| ||| |||||||||||||| ||||  |||||||    
T  117509 aactcacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatcaattcactc--aatcaat 117412  T
Q  211 tcttgtc 217  Q
    | |||||    
T  117411 ttttgtc 117405  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 6951335 - 6951257
Alignment:
Q  94 acatacatttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagtt 172  Q
    ||||| ||||||||||||| |||||||||||||||| |||| ||| ||||  || ||||| | | ||||| ||||||||    
T  6951335 acataaatttataattcaattcacttttacatgaatttatccaaatacaagtcattttactttcgactcacttttagtt 6951257  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 31906320 - 31906389
Alignment:
Q  100 atttataattcaactcacttttacatgaatgtatcaaaaaacaaaccactttacctacaactcaatttta 169  Q
    ||||||| ||||||||||||||||||||||  |||  ||||||||  | |||||||  ||||||||||||    
T  31906320 atttatagttcaactcacttttacatgaattcatccgaaaacaaattattttacctttaactcaatttta 31906389  T

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Target: scaffold0767 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 3016 - 2904
Alignment:
Q  100 atttataattcaactcactt-ttacatgaatgtatcaaaaaacaaaccactttacctacaactcaattttagttagaataaattttacataatcaattta 198  Q
    ||||||||||||||||||||  || ||| |||| || ||| ||| | ||||||| |||||||||| ||||| |  ||||  |||||||  |||||||| |    
T  3016 atttataattcaactcacttgctatatggatgtgtccaaacacatatcactttatctacaactcacttttaatcggaatctattttacgaaatcaattca 2917  T
Q  199 ctccaaatcaatt 211  Q
    ||| |||||||||    
T  2916 ctcaaaatcaatt 2904  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 31900 - 31940
Alignment:
Q  110 caactcacttttacatgaatgtatcaaaaaacaaaccactt 150  Q
    |||||||||||||||| |||||||| ||| |||||||||||    
T  31900 caactcacttttacataaatgtatccaaacacaaaccactt 31940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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