View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3929_low_9 (Length: 731)

Name: NF3929_low_9
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3929_low_9
NF3929_low_9
[»] chr8 (7 HSPs)
chr8 (493-608)||(2532203-2532318)
chr8 (493-607)||(2541795-2541909)
chr8 (679-731)||(2532389-2532441)
chr8 (679-731)||(2541980-2542032)
chr8 (497-589)||(2550066-2550158)
chr8 (496-590)||(1830236-1830330)
chr8 (496-590)||(1864681-1864775)
[»] chr7 (3 HSPs)
chr7 (12-86)||(13558025-13558099)
chr7 (217-284)||(13558206-13558273)
chr7 (438-523)||(13558554-13558636)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 7e-54; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 493 - 608
Target Start/End: Original strand, 2532203 - 2532318
Alignment:
Q  493 aaacaggtgatgattgtattgccgtcaatggtggttccacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaaatt 592  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2532203 aaacaggtgatgattgtattgcagtcaatggtggttctacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaaatt 2532302  T
Q  593 gtgtctctaaagttcg 608  Q
    ||||||||||||||||    
T  2532303 gtgtctctaaagttcg 2532318  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 493 - 607
Target Start/End: Original strand, 2541795 - 2541909
Alignment:
Q  493 aaacaggtgatgattgtattgccgtcaatggtggttccacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaaatt 592  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2541795 aaacaggtgatgattgtattgccatcaatggtggctcctcttttgtcaatgctacaaggattacttgtggacctggccatggaataaggtttataaaatt 2541894  T
Q  593 gtgtctctaaagttc 607  Q
    |||||||||||||||    
T  2541895 gtgtctctaaagttc 2541909  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 679 - 731
Target Start/End: Original strand, 2532389 - 2532441
Alignment:
Q  679 gttagtatgatatactagtagccaaagtttgaattcttgacctcctcaaattt 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2532389 gttagtatgatatactagtagccaaagtttgaattcttgacctcctcaaattt 2532441  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 679 - 731
Target Start/End: Original strand, 2541980 - 2542032
Alignment:
Q  679 gttagtatgatatactagtagccaaagtttgaattcttgacctcctcaaattt 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2541980 gttagtatgatatactagtagccaaagtttgaattcttgacctcctcaaattt 2542032  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 589
Target Start/End: Original strand, 2550066 - 2550158
Alignment:
Q  497 aggtgatgattgtattgccgtcaatggtggttccacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaa 589  Q
    |||||| ||||||||||| || |||||||| ||||||||| |||||||||   || ||||||||||||| |||||||| ||||||||||||||    
T  2550066 aggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa 2550158  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 590
Target Start/End: Original strand, 1830236 - 1830330
Alignment:
Q  496 caggtgatgattgtattgccgtcaatggtggttccacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaaa 590  Q
    ||||||||||||| ||||| || |||||||| || | |||| |||||| ||   || |||| |||||||| || ||||| |||||||||||||||    
T  1830236 caggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaa 1830330  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 590
Target Start/End: Original strand, 1864681 - 1864775
Alignment:
Q  496 caggtgatgattgtattgccgtcaatggtggttccacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaaa 590  Q
    ||||||||||||| ||||| || |||||||| || | |||| |||||| ||   || |||| |||||||| || ||||| |||||||||||||||    
T  1864681 caggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaa 1864775  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 13558025 - 13558099
Alignment:
Q  12 acagatgggtttgacatctctcactcgaaaaatatcacggttatagattccatcattgcaacaggtaaacaaagt 86  Q
    |||||||||||||| |||||| |||| |||||||| |||||  ||||||||| |||||||||||||||| |||||    
T  13558025 acagatgggtttgatatctcttactccaaaaatattacggtagtagattccaccattgcaacaggtaaataaagt 13558099  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 13558206 - 13558273
Alignment:
Q  217 gagtataaaatcacatgtcatactcataattatatggaagtgtatgcctatgttcatgtctaaaatat 284  Q
    |||| |||||||||||||||||||||||| ||| ||||| | |||| |||| ||||||||||||||||    
T  13558206 gagtttaaaatcacatgtcatactcataactatgtggaaatatatgtctatattcatgtctaaaatat 13558273  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 438 - 523
Target Start/End: Original strand, 13558554 - 13558636
Alignment:
Q  438 ccttcaaatcttgttttgtatgtgcattattaataaaatgagttgctttgtttgcaaacaggtgatgattgtattgccgtcaatgg 523  Q
    |||||||||||| || | ||||||||  |||| |||| |||||||||||  ||| || |||||||||||||||||||||| |||||    
T  13558554 ccttcaaatcttattgtatatgtgca--atta-taaattgagttgcttttcttgtaagcaggtgatgattgtattgccgttaatgg 13558636  T

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