View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_92 (Length: 249)
Name: NF3929_low_92
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_92 |
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| [»] scaffold0086 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 28218 - 27970
Alignment:
| Q |
1 |
ttttagctatgaagcatggacgtggtgggaatctggcatgtcaccgtgtccggcgcagttccaactcggacgcgcgtgcgacactggtacgattcgcgtc |
100 |
Q |
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| T |
28218 |
ttttagctatgaagcacggacgtggcgggaatctggcgtgtcaccgtgtccggcgcagttccgactcggacgcgcgtgcgacactggtacgattcgcgtc |
28119 |
T |
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| Q |
101 |
agacgcggattcagccgtatccaacnnnnnnnntctatttggttggacacgaatgcgactctgctctagtgtaaaatatatata--------tgtgtcct |
192 |
Q |
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| T |
28118 |
agatgcggcttcagccgtatccaacaaaaaaaatctatttggttggacacgaatgcgactctgctctagtgtaaaatatatatagccatgtctgtgtcct |
28019 |
T |
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| Q |
193 |
gcgtttttctagattacccgtgtcccctgtccatgtctgagtctgtgct |
241 |
Q |
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| T |
28018 |
gcgtttttctagattacccgtgtcccctgtccatgtctgagtctgtgct |
27970 |
T |
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Target: scaffold0016 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 60404 - 60337
Alignment:
| Q |
58 |
gttccaactcggacgcgcgtgcgacactggtacgattcgcgtcagacgcggattcagccgtatccaac |
125 |
Q |
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| T |
60404 |
gttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacgcggatctagccgtatccaac |
60337 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 33211926 - 33211993
Alignment:
| Q |
58 |
gttccaactcggacgcgcgtgcgacactggtacgattcgcgtcagacgcggattcagccgtatccaac |
125 |
Q |
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| T |
33211926 |
gttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacgtggatctagccgtatccaac |
33211993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 40174469 - 40174402
Alignment:
| Q |
58 |
gttccaactcggacgcgcgtgcgacactggtacgattcgcgtcagacgcggattcagccgtatccaac |
125 |
Q |
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| T |
40174469 |
gttccgacacggacgcgcgtacgacacacgtacgattcgcgtcagacgcggatattgccgtatccaac |
40174402 |
T |
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Target: scaffold0189 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 28368 - 28311
Alignment:
| Q |
68 |
ggacgcgcgtgcgacactggtacgattcgcgtcagacgcggattcagccgtatccaac |
125 |
Q |
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| T |
28368 |
ggacgcacgtacgacacgcgtacgattcgcgtcagacgcggatattgccgtatccaac |
28311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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