View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_95 (Length: 244)
Name: NF3929_low_95
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36656946 - 36656719
Alignment:
| Q |
1 |
cattattatagtatgttattagtttgtttacaagcttttaatgagatgatttatcagtgcctgctttaattgtttaggaacatacatgttttgttaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36656946 |
cattattatagtatgttattagtttgtttacaagcttttaatgatatgacttatcagtgcctgctttaattgtttaggaacatacatgttttgttcaatt |
36656847 |
T |
|
| Q |
101 |
ggttttaatgatgattcaaacaattttctgacagcaacaatgagcaaatctctccttatttgtttattttttggtcagcttaataatattaccaaggggg |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36656846 |
ggttttaatgatgattcaaacaattttctaacagcaacaatgagcaaatctctccttatttgtttattttttggtcagcttaataatattaccaaggggg |
36656747 |
T |
|
| Q |
201 |
ctgatttacctaccactactcaaaacct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
36656746 |
ctgatttacctaccactactcaaaacct |
36656719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 34076589 - 34076803
Alignment:
| Q |
6 |
ttatagtatgttattagtttgtttacaagcttttaatgagatgatttatcagtgcctgctttaattgtttaggaacatacatgttttgttaaattggttt |
105 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||| |||||||||||| ||||||| ||||||||| |
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| T |
34076589 |
ttatagtatgttattagtttgtttacaagcttatgctgagatgatttatcagtgcctgttacaattgttgaggaacatacatattttgttcaattggttt |
34076688 |
T |
|
| Q |
106 |
taatgatgattcaaacaattttctgacagcaacaatgagcaaatctctccttatttgtttattttttggtcagcttaataata-ttaccaagggggctga |
204 |
Q |
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|||| ||||| |||| || |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34076689 |
taat--------aaacatttttttg-cagcaacaatgagcaaatctcttcctatctgtttattttttggtcagcttaataatatttaccaagggggctgc |
34076779 |
T |
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| Q |
205 |
tttacctaccactactcaaaacct |
228 |
Q |
| |
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||| || ||||||||| ||||||| |
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| T |
34076780 |
tttccccaccactactaaaaacct |
34076803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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