View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3929_low_97 (Length: 240)
Name: NF3929_low_97
Description: NF3929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3929_low_97 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34525546 - 34525767
Alignment:
| Q |
1 |
attggcgacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34525546 |
attggcgacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataactttttttccatgatggcctaacttaaactttggtattcactt |
34525645 |
T |
|
| Q |
101 |
tcatgtgtgcatatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34525646 |
tcatgtgtgcatatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataa |
34525745 |
T |
|
| Q |
201 |
aactttatgctgaaaccagatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34525746 |
aactttatgctgaaaccagatg |
34525767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18004491 - 18004712
Alignment:
| Q |
1 |
attggcgacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18004491 |
attggcgacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacttttttaccatgatggcctaacttaaactttggtattcactt |
18004590 |
T |
|
| Q |
101 |
tcatgtgtgcatatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18004591 |
tcatgtgtgcatatttcagtgattttgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccggataa |
18004690 |
T |
|
| Q |
201 |
aactttatgctgaaaccagatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
18004691 |
aactttatgctgaaaccagatg |
18004712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 28764831 - 28764605
Alignment:
| Q |
3 |
tggcgacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataacnnnnnnnccatgatggcctaacttaaactttggtattcactttc |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
28764831 |
tggcaacttgaagttgcaaaacctcattcattagcaaaccatttttccaaaataactttttttccatgatggccaaacttaaactttggtattcactttc |
28764732 |
T |
|
| Q |
103 |
atgtgtgcatatttcagtgattt-------tgtccaagtttacaatatttccagttaatgacaaatatacaaacagtgagagaagttaacacctttcccg |
195 |
Q |
| |
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|||| |||||||||||||| ||| ||| || |||||||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
28764731 |
atgtttgcatatttcagtggttttgttttgtgtataactttacaatattttctgttaatggaaaatgtacaaacagtgagagaagttaaaacctttcccg |
28764632 |
T |
|
| Q |
196 |
gataaaactttatgctgaaaccagatg |
222 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
28764631 |
gataaaactttatgctgaaaccagatg |
28764605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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