View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3930_low_1 (Length: 552)
Name: NF3930_low_1
Description: NF3930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3930_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 42822284 - 42822815
Alignment:
| Q |
14 |
ttctcatcaacgattatgattcttcatatataaaaaattacacatgaataaaagtaaccagacaacaaattatgtcgctaattgataaaccacttcacca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42822284 |
ttctcatcaacgattatgattcttcatatataaaaaattacacatgaataaaagtaactagacaacaaattatgtcgctaattgataaaccacttaacca |
42822383 |
T |
|
| Q |
114 |
ataagactaatcgagccccatttatttacttctcggtgattactaaggcatctttattatgataattagatggttaagatc--------caattgtgtcg |
205 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42822384 |
ataagactaatcaaaccccatttatttacttctcggtgattactaaggcatctttattatgataattagatggttaagaatgaaaagatcaattgtgtcg |
42822483 |
T |
|
| Q |
206 |
ctaatggttaagatagaaaagaccaaatataaactaaagtgaatagacagtaaattnnnnnnnnnnnnnnnnncataatttaacattggaatcactcgtg |
305 |
Q |
| |
|
||||||| ||||| | |||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42822484 |
ctaatggctaagacaaaaaagaccaagtataaactaaagtgagtagacagtaaattaaaaaagaaaaaaaaa-cataatttatcattggaatcactcgtg |
42822582 |
T |
|
| Q |
306 |
atttattatacgtgacatataatttaa--cattgatattgaaattttttcttccactattatctggttgtaccttttccgagtacttcttatactcnnnn |
403 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42822583 |
atttattatacgtgacatataatatcaatcattgatattgaaattttttcttccactattatctggttgtaccttttccaagtacttcttatactctttt |
42822682 |
T |
|
| Q |
404 |
nnngttgttgaagaaaataagtttatagcatttcatcacttaaaatatactcaatgcaatctccactcaaacttggaaattacctaaaaatgtgcatacc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42822683 |
tttgttgttgaagaaaataagtttatagcatttcatcacttaaaatatactcaatgcaatctccactcaaacttggaaattagctaaaaatgtgcatacc |
42822782 |
T |
|
| Q |
504 |
ttaactaaaagtatgctctgatacatatgcaaa |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42822783 |
ttaactaaaagtatgctctgatacatatgcaaa |
42822815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 194 - 536
Target Start/End: Original strand, 33072237 - 33072581
Alignment:
| Q |
194 |
ccaattgtgtcgctaatggttaagatagaaaagaccaaatataaactaaagtgaatagacagtaaattnnnnnnnnnnnnnnnnncataatttaacattg |
293 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
33072237 |
ccaattgtgtcgctaatggttaagacagaaaagactaagtataaactaaagtgagtagacagtaaattataaaagaacaaaaaaacataatttaacattg |
33072336 |
T |
|
| Q |
294 |
gaatcactcgtgatttattatacgtgacatataatttaa--cattgatattgaaattttttcttccactattatctggttgtaccttttccgagtacttc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33072337 |
gaatcactcgtgatttattatacgtgacatataatatcaatcattgatattcaaattttttcttccactattatctggttgtaccttttccgagtacttc |
33072436 |
T |
|
| Q |
392 |
ttatactcnnnnnnngttgttgaagaaaataagtttatagcatttcatcacttaaaatatactcaatgcaatctccactcaaacttggaaattacctaaa |
491 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33072437 |
ttatactctttttttgttgttgaagaaaataagtttatagcatttcatcacttaaaatatactcaatgcaatctccactcaaacttggaaattagctaaa |
33072536 |
T |
|
| Q |
492 |
aatgtgcataccttaactaaaagtatgctctgatacatatgcaaa |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33072537 |
aatgtgcataccttaactaaaagtatgctctgatacatatgcaaa |
33072581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University