View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3930_low_4 (Length: 249)
Name: NF3930_low_4
Description: NF3930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3930_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 4843615 - 4843832
Alignment:
| Q |
14 |
gttataaattatttactgtcaaacaaaaagttatcgttatttcttnnnnnnnnnnnnnnttatagttattcactataagcacaaaagttgatattgccaa |
113 |
Q |
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| T |
4843615 |
gttataagttatttactggcaaacaaaaagttatcgttatttcttaaataaataaaaaattatagttattcactataagcacaaaagttgatattgccaa |
4843714 |
T |
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| Q |
114 |
aaagagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatccnnnnnnngttaaatacttctttgaccaagaccctcnnnnnnnctgtccttt |
213 |
Q |
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| T |
4843715 |
aaagagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatccaaaaaaagttaaatacttctttgaccaagaccctctttttttctgtccttt |
4843814 |
T |
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| Q |
214 |
ttaggtcgaggtttcttt |
231 |
Q |
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|||||||||||||||||| |
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| T |
4843815 |
ttaggtcgaggtttcttt |
4843832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 4813510 - 4813597
Alignment:
| Q |
77 |
agttattcactataagcacaaaagttgatattgccaaaa--agagtcttgatgtgtaaattgtcatggaaatgtgatgaatattatcc |
162 |
Q |
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||||||||||||||||| |||| || ||| | |||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| |
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| T |
4813510 |
agttattcactataagctcaaatgtcgatctatccaaaagaagagttttagtgtgtaaattggcatgggaatgtgatgaatattatcc |
4813597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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