View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_high_11 (Length: 340)
Name: NF3931_high_11
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 5684999 - 5684678
Alignment:
| Q |
1 |
ttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684999 |
ttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaac |
5684900 |
T |
|
| Q |
101 |
accaccagctctttgaacttccaaacnnnnnnncactcttccaccttgccctctcatgcacaaaactatttttcccttgaccttgcttggatcaagggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684899 |
accaccagctctttgaacttccaaactttttttcactcttccaccttgccctctcatgcacaaaactatttttcccttgaccttgcttggatcaagggta |
5684800 |
T |
|
| Q |
201 |
ttgtctaggcaataactgcatcatgaaattaatttattataagtttgacaacataaatttgtaagagataaaactagaaataaaaagtacctagagtttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5684799 |
ttgtctaggcaataactgcatcatgaaattaatttattataagtttgacaacataaatttgtaagagataaaactagaaataaaaagtacctagagtttg |
5684700 |
T |
|
| Q |
301 |
cacttagtatgcctgcatattc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5684699 |
cacttagtatgcctgcatattc |
5684678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5697169 - 5696941
Alignment:
| Q |
1 |
ttaaggtattctcataggtcactccagtagttggaatgaaataaggatcagaaggtacatcatttgcataaactttattgttaccaagtattaaaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| || | ||||| |
|
|
| T |
5697169 |
ttaaggtattctcataggtcactccagtggcaggaatgaaataaggatcagaaggtacatcatttgcatgagttttattgttcccaaggataattccaac |
5697070 |
T |
|
| Q |
101 |
accaccagctctttgaacttccaaacnnnnnnncactcttccaccttgccctctcatgcacaaaactatttttcccttgaccttgcttggatcaagggta |
200 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5697069 |
accaccagctctttgaacttcaaaacttttgttcagtcttccaccttgtcctctcatgcacaaaactatcttccccttgaccttgcttggatcaagggta |
5696970 |
T |
|
| Q |
201 |
ttgtctaggcaataactgcatcatgaaat |
229 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
5696969 |
ttgtcttggcaataactgcatcatgaaat |
5696941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University