View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_high_16 (Length: 290)
Name: NF3931_high_16
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 5684983 - 5685259
Alignment:
| Q |
1 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
100 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684983 |
ctatgagaataccttaaaattagttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
5685082 |
T |
|
| Q |
101 |
ccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggtatttcccatgacacactttatcataatatcaattcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5685083 |
ccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggtatttcccatgacacactttatcataatatcaattgttt |
5685182 |
T |
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| Q |
201 |
ctctttagcatatgctattatatattatacaagatgtattaggaaatttaataatagtattttatttgtgttctctg |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685183 |
ctctttagcatatgctattatatattatacaagatgtattaggaaatttaataatagtattttatttgtgttctctg |
5685259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5697153 - 5697314
Alignment:
| Q |
1 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5697153 |
ctatgagaataccttaaaacttgttcaatatattcattcttctcctaatccaatggcacaacttttgcctggaagaactgtgttagataccaaaccagca |
5697252 |
T |
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| Q |
101 |
ccctctatggccatcttctctagtagaggtcccaatattattgaccctaatattctaaaggt |
162 |
Q |
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|||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
5697253 |
ccctctatggccatgttctctagcagaggtcccaacataattgaccctaatattctaaaggt |
5697314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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