View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3931_high_20 (Length: 254)

Name: NF3931_high_20
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3931_high_20
NF3931_high_20
[»] chr6 (15 HSPs)
chr6 (1-240)||(23391167-23391406)
chr6 (1-163)||(23586931-23587093)
chr6 (1-163)||(23583048-23583209)
chr6 (1-166)||(23289772-23289937)
chr6 (4-164)||(23283461-23283621)
chr6 (5-157)||(23506629-23506781)
chr6 (1-164)||(23257788-23257951)
chr6 (5-163)||(23633965-23634123)
chr6 (7-164)||(23251812-23251969)
chr6 (5-166)||(23593994-23594155)
chr6 (23-141)||(23506807-23506925)
chr6 (4-65)||(23266442-23266503)
chr6 (179-240)||(23582941-23583002)
chr6 (179-240)||(23586824-23586885)
chr6 (1-65)||(23247499-23247563)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23391406 - 23391167
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23391406 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 23391307  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacggctatttccacctctgccacggaggagcagagtag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||    
T  23391306 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacggctatttccacctctgctacggcggaacagagtag 23391207  T
Q  201 gacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23391206 gacttttatggaagaggaagaagagggggtgatgaacatg 23391167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23587093 - 23586931
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||||| || ||||| ||||| |||||||||||||    
T  23587093 gcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggctccccaaacctgcaactactcaagcaaaggatatacaaaagg 23586994  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    | ||| || ||||||| ||||||||||||||||||||||||| | | |||||| ||| |||||    
T  23586993 ctgctacagaggccgccgaggctttcagaccagacaagactttattgactaatcacaatgaca 23586931  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23583209 - 23583048
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| | |||||| || ||||||||||| |||||||||||||    
T  23583209 gcaatggcattgaggg-ccgctacgcctgtctcaactttgcagactcagcatggcggctccccaaacctgcaactactcaggcaaaggatatacaaaagg 23583111  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    | |||||| |||||||  |||||||||||||||||||||||| | | |||||| ||| |||||    
T  23583110 ctgctgcagaggccgccaaggctttcagaccagacaagactttattgactaatcacaatgaca 23583048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 23289937 - 23289772
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||||| |||||| || || | |||||||| || |||| ||    
T  23289937 gcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 23289838  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacgg 166  Q
    | |||| | | ||||||||||||||||||||||||||||||| ||| |||| || |||||||||||    
T  23289837 cagctggagaagccgctgaggctttcagaccagacaagactttaatgactactggcattgacacgg 23289772  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 23283621 - 23283461
Alignment:
Q  4 atggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcgg 103  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| | |||| |||| ||||| |||||| || || | |||||||| || |||| ||| |    
T  23283621 atggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaagggcag 23283522  T
Q  104 ctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    ||||| | ||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  23283521 ctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacac 23283461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 23506781 - 23506629
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    ||||||| || || ||| ||||||||||||||||||||||||| || | |||||| ||||| |||||||| |   || ||| |||||||||||| |||||    
T  23506781 tggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagatatacaaaacgcggc 23506682  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgaca 157  Q
    |||| | ||  ||||||||||||||||||||||||||| ||  ||||||||||    
T  23506681 tgcagaagctactgaggctttcagaccagacaagactttaacgactaatgaca 23506629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23257951 - 23257788
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| || || ||  |   |  ||||||||| |||||||    
T  23257951 gcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaagg 23257852  T
Q  101 cggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    |||||||  | || || || ||||| |||||||||||||||| ||| | |||||| ||||||||    
T  23257851 cggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacac 23257788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 23634123 - 23633965
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    ||||||| || || ||| |||||||||| || ||||| ||||| || | |||||| ||||| |||||||| ||  || ||| ||||||||||||| ||||    
T  23634123 tggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactacagagacaagagatatacaaaagacggc 23634024  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgaca 163  Q
    |||| | || || ||||||||||||||||||||||||| ||  ||| |||||| |||||    
T  23634023 tgcagaagctgccgaggctttcagaccagacaagactttaacgactgatgacaatgaca 23633965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 23251969 - 23251812
Alignment:
Q  7 gcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggctg 106  Q
    ||||||||||||||||| ||||||||||| ||||||||||| | |||||| || ||||| || || ||  |   |  ||||||||| |||||||| |||     
T  23251969 gcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagcta 23251870  T
Q  107 cacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 164  Q
    || | ||||| || ||||| ||||||||||| |||| ||| || | ||||||||||||    
T  23251869 caaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacac 23251812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 23594155 - 23593994
Alignment:
Q  5 tggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggc 104  Q
    |||||||||| ||  | ||||| |||||||||||||||||||| || |||||||||| ||| |||||||| |   || |||   ||||| ||||||||||    
T  23594155 tggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcctgccactataaagacaaggtatatataaaaggcggc 23594056  T
Q  105 tgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacacgg 166  Q
     ||| | ||||| |||||||||| |||| | |||| |||||| |||  ||| ||||||||||    
T  23594055 agcagaagccgcagaggctttcaaaccaaataagagttcaatgactggtgatattgacacgg 23593994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 23506925 - 23506807
Alignment:
Q  23 acgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaaggcggctgcacaggccgctgaggc 122  Q
    ||||||||||||||||||||||||| || | |  ||||||||| ||||| ||     || ||||||||||||||||| |||||||  | || ||||||||    
T  23506925 acgcctgtctcaactttgcagactcggccttgacgctccctattcctgctacttgcgagacaaaagatatacaaaagacggctgctgaagctgctgaggc 23506826  T
Q  123 tttcagaccagacaagact 141  Q
     |||||||||| |||||||    
T  23506825 attcagaccaggcaagact 23506807  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 23266503 - 23266442
Alignment:
Q  4 atggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctat 65  Q
    |||||||||||||| ||||||||||||||||| |||||||| || | ||||||||| |||||    
T  23266503 atggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctat 23266442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 23583002 - 23582941
Alignment:
Q  179 ctgccacggaggagcagagtaggacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| || ||||||||||||    
T  23583002 ctgccactgaggagcagagtatgatttgtatggaagagaaagaagaaggagtgatgaacatg 23582941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 23586885 - 23586824
Alignment:
Q  179 ctgccacggaggagcagagtaggacttttatggaagaggaagaagagggggtgatgaacatg 240  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| || ||||||||||||    
T  23586885 ctgccactgaggagcagagtatgatttgtatggaagagaaagaagaaggagtgatgaacatg 23586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23247563 - 23247499
Alignment:
Q  1 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctat 65  Q
    ||||||||||||||||||||||| ||||||||||| ||  ||||||| | |||||| || |||||    
T  23247563 gcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctat 23247499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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