View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3931_high_3 (Length: 496)

Name: NF3931_high_3
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3931_high_3
NF3931_high_3
[»] chr7 (1 HSPs)
chr7 (98-397)||(2313245-2313544)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 98 - 397
Target Start/End: Original strand, 2313245 - 2313544
Alignment:
Q  98 caaaaatatgaattttaaaaataaggaaaaatttggcgagcgagtaaaatagtggatcaaaactgtaattaaatatttttaattagaattctacaatcca 197  Q
    ||||| |||| ||||||||||| |||||||||||   ||||||||||||||| ||||||||||||||||||||||||||| ||||||||  || ||||||    
T  2313245 caaaactatggattttaaaaatgaggaaaaatttcaagagcgagtaaaatagcggatcaaaactgtaattaaatatttttgattagaatgttataatcca 2313344  T
Q  198 attatgaagattgttgaggttagttattgttgttgtatgcaggcagtagctcaacatattaggaggacaataacaatgtcaagtacagtagttaccaatt 297  Q
    | ||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2313345 actacaaagattattgaagttagttattgttgttgtatgcaggcagtagctcaacatattaggaggacaataacaatgtcaagtacagtagttaccaatt 2313444  T
Q  298 tggttggaccagttcaacaaatgtctttggctaatcatcctgtgaaaggcttgtacttcaccttagctggtggtcctgaggtatcatgaattgttatact 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2313445 tggttggaccagttcaacaaatgtctttggctaatcatcctgtgaaaggcttgtacttcaccttagctggtggtcctgaggtatcatgaattgttatact 2313544  T

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