View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3931_high_5 (Length: 452)
Name: NF3931_high_5
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 48599584 - 48600026
Alignment:
| Q |
11 |
atcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagccgatatttggt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48599584 |
atcatcatccacattaatggcctaatattaacagccatgtaacattttaatatacaaacattcttttctatagtattatgattaatagccaatatttggt |
48599683 |
T |
|
| Q |
111 |
attatggtgggtatgccaaaatcacaatgacccgccatg-taccaaacatacactaaaactgactagaaatggaagcacatggacacgaacaaaaaacaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48599684 |
attatggtgggtatgccaaaatcacaatgactcgccatgataccaaacatacactacaactaactagaaatggaagcacatggacacgaacaaaaaacaa |
48599783 |
T |
|
| Q |
210 |
gtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagttaatattgacttacagagcgagcggac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48599784 |
gtatcagggctatgagattggtgaaaagacaacatgagatagttaacatgtgaaaaacttagtagtcaaaagtaaatattgacttacagagcgagcggac |
48599883 |
T |
|
| Q |
310 |
cccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaannnnnnnncatgaattaaaat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48599884 |
cccacggcccaaggtcttgatcaacccatatcaagaaatccttcagaatctgcatggcgaaaatgtaaggggtaaccaattttttttcatgaattaaaat |
48599983 |
T |
|
| Q |
410 |
acaaatgtggtgcatgtaacgaaaaatattataaaaatggcat |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48599984 |
acaaatgtggtgcatgtaacgaaaaatattacaaaaatggcat |
48600026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University