View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3931_high_6 (Length: 379)
Name: NF3931_high_6
Description: NF3931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3931_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 28754988 - 28754636
Alignment:
| Q |
11 |
cataggaccgtgccaagtgcacataactgattggttgttgtgttttggaaaaggagagtagggacatcaacttcgggcgaggtttgctcccctccatgat |
110 |
Q |
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| T |
28754988 |
cataggaccgtgccaagtgcacataactgattggttgttgtgttttggaaaaggagagtagggacatcaacttcgggcgaggtttgctcccctccatgat |
28754889 |
T |
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| Q |
111 |
cccataattagaacatattagttccattccatgctctcttttccacaccaaccttgtaacaattattctatttgttgaatgagtctttgttttgttcaat |
210 |
Q |
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| T |
28754888 |
cccataattagaacatattagttccattccatgctctcttttccacaccaaccttgtaacaattattctatttgttgaatgagtctttgttttgttcaat |
28754789 |
T |
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| Q |
211 |
tttttactacttgttcatttctatgatcttggttctatgctagacttcatgtcttctcctccctctctagacatatagagagagaagaaagtgttatcat |
310 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754788 |
tttttactacttgttaatttctatgatcttggttctatgctagacttcatgtcttctcctccctctctagacatatagagagagaagaaagtgttatcat |
28754689 |
T |
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| Q |
311 |
aagaagaaaaaacaattcatcatgttgcaaagagctgcaagcaatgcttattc |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754688 |
aagaagaaaaaacaattcatcatgttgcaaagagctgcaagcaatgcttattc |
28754636 |
T |
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